Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 410 2e-109 seq187 396 5e-105 >seq18 Length=94768 Score = 410 bits (454), Expect = 2e-109 Identities = 616/865 (71%), Gaps = 15/865 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 1597 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGC 1538 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 1537 CGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCG 1478 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| |||| || | || || |||||||| ||| |||||||| || || ||||| Sbjct 1477 CCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 1418 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||||| | | |||| || |||||||| || | ||||| |||||||||||||||| Sbjct 1417 CCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCG-GAGGCTCGCTGCTTCTACGGCT 1359 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||||||||| | ||| || ||||||||| Sbjct 1358 TCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACA 1299 Query 42583 TCCTGGATCCCGTCGAGCG---TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 || ||| |||| ||| | || |||| ||||| |||||||| || ||| Sbjct 1298 TCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGT---GCCATCGAGACGATCCCGTGCG 1242 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 | |||||||||| |||||||||||| ||| || || | | | | | | Sbjct 1241 TGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGG 1182 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | ||| | || || ||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 1181 AGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCA 1122 Query 42760 TCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || || || ||||| || || | |||||||||||| |||||| Sbjct 1121 TCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 1063 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 ||| |||||||||| |||| | |||||| || |||||| ||| ||||| | | | Sbjct 1062 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTTGGTG 1006 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| || || || || | || ||| | || || |||| ||| ||| | Sbjct 1005 AACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCAC 946 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||||| | | | ||||| |||||| ||| ||||||||||| | ||||||||| Sbjct 945 GAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGC 886 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC-GCCTCTA 43057 |||||||| ||| ||| ||||||| || |||| | ||||| || || |||| Sbjct 885 CAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGT-GCATCCAAGATCTA 827 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | ||| ||||||| ||||| | |||||| || |||||||||||||||| Sbjct 826 CAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTT 767 Query 43118 TTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||||| | ||| ||| Sbjct 766 CTTCGAGAAGCGCGTGGGCGAGTAC 742 >seq187 Length=41780 Score = 396 bits (438), Expect = 5e-105 Identities = 1415/2169 (65%), Gaps = 100/2169 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTG-GTCCTC--AGGTAGTACATGCCGG 243791 ||||| ||||||||| || || |||| | | |||| | | |||||||||||| | Sbjct 19200 CCACGGTGAACTGGATGG---CGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCG 19256 Query 243792 TCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 ||||||| || | |||||||| || |||||||| ||||||||| | ||| | Sbjct 19257 TCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGTC---- 19312 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910 |||||| ||| | | | ||| || |||||||||||| | | ||| |||| Sbjct 19313 --GGGTCG-----GCAATGTGA-ATGTTCAGCGACTGGCTCTGGCAAATGTAGG-CGCCA 19363 Query 243911 CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATG 243970 || || || | || | | | | ||||||| ||||| || |||||||||| | Sbjct 19364 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 19423 Query 243971 GGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 ||||| || || || | || | |||||||| ||||| || | | | | Sbjct 19424 TCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGAATC 19483 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGC 244087 ||| |||||| | | |||| | ||||| |||| |||| ||| | |||| | Sbjct 19484 TGGTTGCGCACCTCAGGCGTCCAGATGCCCA---GCTCGATCAGCTCCTTCATGAGGTAC 19540 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||||||| | | ||||| || | |||||||||||| | ||| | ||| || | Sbjct 19541 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 19600 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| || | | Sbjct 19601 GGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 19660 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAG 244264 || || || ||| | | ||||||| | ||| || || ||||| | ||| Sbjct 19661 ACGAGGAGCGAGTTGCGGATGCCGTGCTT---GATCACGTTCTCCTTGAGCGCAGCCCAA 19717 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||||| |||||| || || | | || |||||||||||| ||||| | | ||| Sbjct 19718 TCCCACAAGCCCGA-AGA----CGGGGT-GACGCCCCACATGTCGAACTGGAAGATACCC 19771 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCGCGCTGGGCCAGCT---T 244380 |||||| | || |||| | | ||| ||| ||| || | | || ||| | || | Sbjct 19772 TTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTC-CTTGGCGATCTCCAT 19830 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 || |||| | | ||||||||||| ||||||||||| || |||| | || || Sbjct 19831 CGAGGTCTCC---ATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACG 19887 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 ||| |||| | | | | || | ||| | || || | || || || ||||| | Sbjct 19888 GGC-TTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 19946 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGT 244556 |||| || || | || | ||| ||| ||||||| |||| || || |||||||| Sbjct 19947 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTCCTCCACGGGGT 20003 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCA 244616 | ||||| |||| || |||||||| | ||| ||||| | || | || ||| || Sbjct 20004 AGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACA 20063 Query 244617 GCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTG 244675 || ||| ||| | || | ||| |||||| ||||||| | | Sbjct 20064 GCTTCTGGTAGTTGAACAC-------TCC------------ATCCTCCACAAACTTGGGG 20104 Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| || ||||||||||| || |||||||| || | ||||||| | |||| Sbjct 20105 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATC 20164 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 ||| ||| | ||| || | ||| ||||| |||| ||| || || |||||| |||| Sbjct 20165 TCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 20224 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 ||||||||||| |||||||| ||| | || ||||| | ||| ||| | |||| | | Sbjct 20225 GCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCG 20284 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 ||| || | | || |||| |||| |||| || ||||| |||||| | Sbjct 20285 AACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCG 20344 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 ||||| | |||||||||| ||||||| ||||| || |||||| | ||||| Sbjct 20345 TACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAG 20404 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | || ||||||| |||| | | || | || |||||| || ||||||| ||| || Sbjct 20405 AAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGA 20464 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 || | ||||||||| | | | ||| || ||| |||||| | |||||||| Sbjct 20465 GCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGG 20524 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 || || || ||||| ||||||| ||||||| ||||| |||| | ||| |||||| Sbjct 20525 AACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTG 20584 Query 245156 TTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTAT 245214 |||||||||||||| | | || | | ||||||| | ||| | || | || Sbjct 20585 CCTCCTCCCTGGTCCACATAGCGGGCCGTG-TCATTGAAGACCCTCAGCATGGGGATGAT 20643 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| || ||||| ||||| ||||||| | | || | | || |||| || Sbjct 20644 CCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCAT 20703 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 ||||| | || ||||| |||||||||| ||||| ||||| ||||| Sbjct 20704 ACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 20763 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 |||||||| || ||| || |||| ||||| || || || |||||||| || Sbjct 20764 AATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACG 20823 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGA 245453 || ||| | ||| || || ||||| | ||||| |||||| | | || || | || Sbjct 20824 CGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG-AACATCTGTGACATGA 20882 Query 245454 ACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTC 245512 | | ||||| || || || | ||||| | ||| || ||| || ||| | | Sbjct 20883 GCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGC 20941 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTC-CCTTGAGCATGTAGGAGCG 245571 |||| | |||||||| ||| | | | || | || | || | |||| || Sbjct 20942 ATGATCATCTGCTGGGGGCGCTCCA-CGACCTTTCCGTTCACGCGGAAGAGGTAGCCCCG 21000 Query 245572 CTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGC 245631 ||||||||||||||| || ||||| ||| ||||||| || ||| ||| ||| | Sbjct 21001 CTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCCGA 21060 Query 245632 GTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGA 245689 || || ||| || ||||| | | || || | | || | | | || ||||| || Sbjct 21061 GTTAAG-CTCGTCCTTGTGCTCCATCAC-GAGCGCATACACGTCGTCGGCGATGAGCGGC 21118 Query 245690 GCC-CTGAGCCCG--GTGTCCGGATTGACGTTGAACCAGAGCCTC----TTGCACACCTC 245742 ||| | | ||||| | || | || ||| ||| |||| ||| ||| Sbjct 21119 GCCGCGGCGCCCGTCTTCTCGTGCGTGTTCTTGTGGAAGA-CCTCGATGTTG-TCAC--T 21174 Query 245743 CGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACTT 245802 ||| ||| | | ||| ||| |||||||||| || || ||||||||||||| ||| Sbjct 21175 GAAGACCTT---GTTCGTGTTCTTGTGCAGGTTGGACACGGCGATGCGCGCCGCCAGCTT 21231 Query 245803 GCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTCAAT 245862 | | |||| ||||| ||| || || | |||||| | ||| ||||||||| | Sbjct 21232 GGAGAAGTCTGGGTGCTGCGTGCTCTGGTACGCGGCCGTCTCGGCGGCCAGCTCGTCCAG 21291 Query 245863 CTCGGACGT 245871 ||||||||| Sbjct 21292 CTCGGACGT 21300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944285349057120