Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq336 158 3e-33 seq18 104 5e-17 >seq336 Length=29666 Score = 158 bits (174), Expect = 3e-33 Identities = 425/639 (67%), Gaps = 31/639 (5%) Strand=Plus/Minus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | | ||||| Sbjct 14036 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCGTA 13980 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || |||| |||||||||||| |||||||| ||||| || | || Sbjct 13979 GTGAATGATGTTGGTACAGACAGTGTCGAGGAACCCAGAGTCGTGCGACACCATGATGCT 13920 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 13919 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 13860 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||| |||||||| ||||| || || | | || ||| | ||||| ||||| ||||| Sbjct 13859 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCAGCCTTCTGCAGCATGGCACGAGCAAG 13800 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| || | || ||| || || Sbjct 13799 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCAT 13746 Query 334022 ATC------AAAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATGT 334074 || ||||| || | | || || || || | || || |||| | ||| Sbjct 13745 CTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAG---GAGTGT 13690 Query 334075 T-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | ||| | || | || || || |||||||| | | | || | || ||||| Sbjct 13689 TCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGGAA 13634 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTT 334191 | | || | ||| || ||| | |||| |||| | | | || |||||| || | Sbjct 13633 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGC--TGGGGAAGCCCT 13576 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||||||||| ||||||||||||||||| || ||||| ||||| || || | Sbjct 13575 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 13516 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA-CCGCGTATTGTTCAGAAGAATTTTT 334310 |||||||||| |||| |||||||||| | ||| || | |||||||| ||||| | Sbjct 13515 ACAGACCGTAACGGTGGCCACGCTTCA-AGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 13457 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||| || || || || ||||| || | ||||| ||| Sbjct 13456 CCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 13418 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 14444 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 14385 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 14384 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 14325 Query 333434 CTTCCAAAC 333442 |||||| || Sbjct 14324 CTTCCACAC 14316 >seq18 Length=94768 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 1159 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 1100 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 1099 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 1040 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 1039 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 982 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 981 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 922 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 921 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 862 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 861 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 802 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 801 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102815535974700