Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq170 123 2e-23 seq44 109 5e-19 seq1104 104 2e-17 >seq170 Length=44224 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | ||||| || || | ||| || || || || |||||||| || Sbjct 11598 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11657 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||||||||| || |||| || ||||||||||| || || Sbjct 11658 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11717 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 || ||||| || || || ||||| ||||| || || | | | | |||| |||| Sbjct 11718 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCA 11776 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 | || | || | |||||||| |||||||| || ||||| || ||||| || || Sbjct 11777 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGAT 11831 >seq44 Length=70920 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| | || | ||| || || || || |||||||| || Sbjct 20302 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20361 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 20362 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 20421 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 20422 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 20481 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| ||||| || || ||||| || ||||| || Sbjct 20482 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 20531 >seq1104 Length=8652 Score = 104 bits (114), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 4880 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4939 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || ||||| ||||| || || || ||||| ||||| ||| || Sbjct 4940 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4999 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| || || || | || | ||||||||| |||| || || || | Sbjct 5000 ATGCTGTCGGA-CGGC-TCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 5057 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 5058 AGATCTGCAT 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499616307755280