Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04]
4,562 sequences; 39,184,277 total letters
Query= NC_011055.1
Length=76312
Score E
Sequences producing significant alignments: (Bits) Value
seq752 143 1e-29
>seq752
Length=14378
Score = 143 bits (158), Expect = 1e-29
Identities = 331/497 (67%), Gaps = 9/497 (2%)
Strand=Plus/Plus
Query 65233 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65292
|||| |||||| ||||||||| | | || | | ||||||||||| || ||||| |||
Sbjct 7504 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7563
Query 65293 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 65352
| ||| || || ||||||||| | || || | || ||||| |||| |||
Sbjct 7564 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7623
Query 65353 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65412
||| || ||||| | | || | |||| || | ||| ||||||||| || |||
Sbjct 7624 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7683
Query 65413 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65472
||||| |||||||| || ||||| || || ||| || | | ||||| ||||| |
Sbjct 7684 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7743
Query 65473 ATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 65529
||| || || ||||||||||||| || | | |||| |||| ||| | |
Sbjct 7744 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7801
Query 65530 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 65589
||| | |||||| | ||| ||||| | |||| | || ||| | ||| |
Sbjct 7802 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7857
Query 65590 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65649
|| |||| |||| || ||| | | ||||| || || ||| |||| | || ||||
Sbjct 7858 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7917
Query 65650 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 65709
| | ||||||||||| || |||||||||| || |||||||| | ||||
Sbjct 7918 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7977
Query 65710 AACAAGCTGGCCCCGCC 65726
||||||||||| ||||
Sbjct 7978 AACAAGCTGGCGTCGCC 7994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 244060029660386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |