Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq752 120 1e-22 >seq752 Length=14378 Score = 120 bits (132), Expect = 1e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7408 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7467 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7468 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7527 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7528 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7587 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7588 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7647 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 7648 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 7707 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 7708 ATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 7767 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 7768 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 7827 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 7828 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 7884 Query 66450 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 7885 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 7941 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7942 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242456918797304