Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq187 181 1e-40 seq18 118 1e-21 seq44 109 5e-19 seq1104 100 3e-16 seq170 95.1 1e-14 >seq187 Length=41780 Score = 181 bits (200), Expect = 1e-40 Identities = 623/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCT 153654 ||| | ||||||||| || || || ||| ||| |||| || || |||||| || |||| Sbjct 20107 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20165 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 || ||| | |||||| | || ||| | || ||||| || ||||| ||| Sbjct 20166 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20225 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---A 153771 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20226 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20285 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || || ||| ||||| ||||||| || Sbjct 20286 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20342 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||||||||| |||| ||| ||| ||||| || || || | Sbjct 20343 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20402 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | || |||| | ||| || | || || |||||||||||| || ||||| | Sbjct 20403 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20462 Query 153952 GCGCGTACATGAGGT--CGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 | ||||| | ||||| ||||||| |||| || | || | ||||| ||| | Sbjct 20463 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20519 Query 154009 TGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | | || | | | | ||| |||||||| || || | ||||| ||| | | ||||| Sbjct 20520 CCAGGAACTCGA-ACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20578 Query 154068 CGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||||| ||| ||||| || || | ||| || | | |||||||| | || |||||| Sbjct 20579 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20638 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | ||| | | | ||||| || ||| | |||| |||||| | | Sbjct 20639 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20698 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 |||| ||| |||||| || ||| | |||| || ||| ||||| | ||||| Sbjct 20699 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 20758 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||| || || ||||| | | | | |||| ||||||||| ||| ||| Sbjct 20759 TCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGC 20818 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 ||| |||| || || |||||| ||||| ||||||||||||| | | || | Sbjct 20819 GGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGAC 20878 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | ||||| | | || | | ||| || | |||||| || ||||| ||| Sbjct 20879 ATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACG 20938 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCA 154484 ||||||| ||| ||||| || || || |||| | || | ||||| || || Sbjct 20939 CGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTAGCCC 20998 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCC 154544 ||||| || ||| | ||||| || | ||| ||||| || | || || ||||||| Sbjct 20999 CGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCC 21058 Query 154545 G 154545 | Sbjct 21059 G 21059 >seq18 Length=94768 Score = 118 bits (130), Expect = 1e-21 Identities = 297/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| || |||| |||||| || |||||| | || || || || ||| | || Sbjct 1182 GAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCC 1123 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | ||||| || |||| ||| |||||| | || Sbjct 1122 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 1063 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACC 52574 || ||||| || ||||||||||||| ||||||||| ||| || | |||| | Sbjct 1062 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAAC 1003 Query 52575 GAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATCGAA 52631 || || |||| | | || | | || | || || |||| || || Sbjct 1002 ---AAGCTGC---CGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAG 949 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | ||||| | | | | |||| || || |||||| | ||||||||| | | |||| Sbjct 948 CACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATG 889 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTA 52750 ||| ||||||||||||| ||||| || || ||| || || || ||| |||| | Sbjct 888 TGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCATCCAAGAT- 830 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || ||||| || ||||| || | ||| | | || ||||| ||||||||||||| Sbjct 829 CTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAA 770 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| || |||||||| Sbjct 769 CTTCTTCGAGAAGCGCGTGGGCGAGTA 743 >seq44 Length=70920 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || || | | |||||||| || ||||||||||||||| Sbjct 20302 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20361 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 20362 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 20421 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 20422 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 20481 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 20482 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20529 >seq1104 Length=8652 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 4878 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4937 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 4938 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 4996 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || ||| || || | ||| | || || || ||||| || || ||| Sbjct 4997 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5056 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 5057 AAGATCTGCATG 5068 >seq170 Length=44224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 11599 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11658 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 11659 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11718 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 11719 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11778 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||| ||| || || || |||||||| Sbjct 11779 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496234100636640