Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq187 201 1e-46 seq136 149 7e-31 seq18 105 8e-18 >seq187 Length=41780 Score = 201 bits (222), Expect = 1e-46 Identities = 733/1127 (65%), Gaps = 39/1127 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || ||||| ||||||| |||||||| || || | ||||| ||||| || |||||| Sbjct 19919 AGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTG 19978 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || || |||||||| ||||| ||| |||||| || | ||| Sbjct 19979 GACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGG 20038 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||||| ||| || | || | || || | ||| | |||| | |||| Sbjct 20039 GTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCCATCCTCC------ 20092 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329 ||| | |||||||| || | |||||| || |||||||| | ||| || | || | Sbjct 20093 ACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCG--GGCGACG 20150 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTCT 110386 |||| |||| ||| || ||||||||| || | | || || | ||||| || Sbjct 20151 TGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTG---CCGAGGTTCTGCT 20207 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | ||||| ||| |||| || ||||| || |||||| | || || || || ||| Sbjct 20208 GGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCT 20267 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAGA 110502 | | | || ||||| ||| || | || ||| || || |||| ||| | Sbjct 20268 GCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGCATTGATCGTCTTGCGC--GCGCGC 20323 Query 110503 CCTTCCTCCTCGTACTTGGTGTACA-AGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || |||| ||||||||| ||||| |||| || || || | || | ||| || | | Sbjct 20324 CCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCGAACTCGTCGCCCCAGCAC-TCGTAGA 20381 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || |||| | ||| ||||| ||| ||| || || | | || || | ||||| Sbjct 20382 GTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCA 20441 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| || || | ||||| || |||| ||||| || || | || || | | Sbjct 20442 TGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCT-CGTTG 20500 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| ||| ||||||| || || | | || | |||||| || || || ||| Sbjct 20501 CCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAG 20560 Query 110740 ACAGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| || || || || | || |||||| |||||||| || ||| ||||| Sbjct 20561 ATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTG 20620 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 |||||||| ||||| || || || || | |||| || || || || | || | Sbjct 20621 AAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTG 20680 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 || |||| || |||| ||| ||| || |||||||| || |||||||| || Sbjct 20681 TTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCAC 20740 Query 110917 GCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 || |||| |||| || | ||||| || |||||||| || ||| |||| | || Sbjct 20741 GCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGG 20800 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || || || |||| ||| ||||| ||||| || || || ||||| || || ||||| || Sbjct 20801 AAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGC 20860 Query 111037 ATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 | || | || | || ||||| | || |||| ||||| | | | |||| Sbjct 20861 GTAAAGA-ACATCTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTT 20919 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||||||||| | || || ||||||| ||| | || || || | | |||||| | Sbjct 20920 GTGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGT- 20978 Query 111156 AACACGCTGA--AGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||||| || ||||| | | ||| || ||||||| || ||||| Sbjct 20979 -TCACGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTA 21024 >seq136 Length=48774 Score = 149 bits (164), Expect = 7e-31 Identities = 326/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 2666 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 2725 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 2726 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 2782 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| || ||| | | | | |||| ||||| Sbjct 2783 AGCTGGTTGAGCGTGTTTTCACGCTCGTCATTGCCGC-CGGAGAAGTTGCCCTT-GCTTC 2840 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 2841 GTGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 2900 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| | || ||||| |||||||| || | ||||| Sbjct 2901 CCTCCTTGAACAGGTCACGTACACGCGAGGGACCCACACCAACGAACATTTCGATGAAGT 2960 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 2961 CTGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 3019 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | || || |||||||| || | ||| |||| || ||||| ||||||||| || ||| Sbjct 3020 AACGTTTTGCCCGTACCGGGCGGGCCAACGAGCAGCGCGCCCTTGGGGATCTTCGCTCCA 3079 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 3080 AGCTCCGTGAAGCGCTTTTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 3139 Query 11968 GC 11969 || Sbjct 3140 GC 3141 >seq18 Length=94768 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 743 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 802 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 803 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 861 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 862 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 920 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 921 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 980 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 981 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 1036 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 1037 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 1095 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 1096 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 1155 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 1156 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 1214 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 1215 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588942413643600