Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq187 172 6e-38 seq18 122 1e-22 seq2225 86.0 7e-12 >seq187 Length=41780 Score = 172 bits (190), Expect = 6e-38 Identities = 736/1144 (64%), Gaps = 43/1144 (4%) Strand=Plus/Plus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| ||||||||||||| || || || | ||||| || | ||| ||||| || ||| Sbjct 19922 ATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGAC 19981 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || ||||| ||| ||||| || | || ||||||||| ||| | || ||| Sbjct 19982 TTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTC 20041 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 20042 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 20095 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 20096 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 20155 Query 106511 TCTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTA 106567 || | ||| || ||||||||| ||| ||||| || | |||| ||||| Sbjct 20156 TCCATAATCTCGCAGCACAAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 20212 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||| ||| |||||||| |||||| | ||| |||||||| |||| | Sbjct 20213 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCG 20272 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCC 106681 | || || || ||||| || ||||| || || ||| || || || ||| Sbjct 20273 TCCAGGATGGCGAACCACA-----GCTGCTGGG-CATTGATCGTCTTGCGCGCGCGCCCC 20326 Query 106682 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACC 106740 ||| ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 20327 TCCTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCC 20385 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || |||| | || |||||||| ||| | || | | || || ||||||||||| Sbjct 20386 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 20445 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 106859 || || || | |||||| | | ||||| || | | | | || | |||| || | Sbjct 20446 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGT 20504 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| || | ||| |||||||| | | || |||||||| ||||| || |||| | Sbjct 20505 GGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGG 20564 Query 106920 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 ||| || || || || | || | || | |||||||| || ||| | || || | Sbjct 20565 CGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGA 20624 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTA 107035 | | ||||| || || || || | ||| || || || || || || || | || Sbjct 20625 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTC 20683 Query 107036 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 107095 |||| | | | || || || |||||||| || |||||||| ||||| ||| Sbjct 20684 GTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCG 20743 Query 107096 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 107155 |||| | | || || | || || || | || ||||| |||| |||| | ||||| Sbjct 20744 CACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAA 20803 Query 107156 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---A 107212 || |||| |||||| | || || || || || ||||| || || || ||||| | Sbjct 20804 CACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTA 20863 Query 107213 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 | |||||| || ||||| || || || | || | | | ||||||| | | Sbjct 20864 AAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 20920 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 || || || | ||||| ||||| | ||| | ||||| |||| || | || | Sbjct 20921 TGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTC 20980 Query 107333 AGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGT 107390 | || ||||| |||| | ||| || || |||| || ||||| | | ||| ||| Sbjct 20981 A--CGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21038 Query 107391 CCCG 107394 |||| Sbjct 21039 CCCG 21042 >seq18 Length=94768 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 743 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 802 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 803 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 860 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 861 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 920 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 921 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 980 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 981 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 1035 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 1036 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 1095 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 1096 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 1155 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | || ||||| | | |||| ||| || | |||| |||| | Sbjct 1156 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 1214 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 1215 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 1263 >seq2225 Length=2885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 213 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 154 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 153 CCGGTAGGAGCT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589947156344880