Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq44 111 1e-19 seq373 102 6e-17 seq170 102 6e-17 seq58 86.0 5e-12 >seq44 Length=70920 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590 |||| || ||||| | || |||| |||||| || ||||| ||| || || || ||| Sbjct 20293 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTG 20352 Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 || || || | ||| |||| |||| |||||| ||||| || ||||| ||||| || Sbjct 20353 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 20412 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 || | || | |||||||||||| || || || || || | | || || || Sbjct 20413 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 20472 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| |||| ||| || || || |||||||| || || || || |||||||| Sbjct 20473 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20528 >seq373 Length=28213 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 |||||| | | | ||| ||||||| | ||| |||||||| || | ||| || | ||| Sbjct 17450 AAGTCTTCGGCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCG 17391 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 |||||||| || || ||||||||| | ||| | || || ||||| || ||||| | Sbjct 17390 ATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCGGCGCCACA 17331 Query 9244 CGACCGTAGCATCCCACCGGTAATTG-CACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || |||| ||| ||| ||| || | |||| || ||| ||| |||| || |||||||| Sbjct 17330 CGCGCGTAACAT-CCAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCC 17272 Query 9303 GTGTTTTGGAATCACGGTGTCGTAGCCG 9330 | |||||||| | ||||||| || Sbjct 17271 GCCCGCGGGAATCACAGCGTCGTAGGCG 17244 >seq170 Length=44224 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| || ||||| ||| || || || ||||| || Sbjct 11599 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11658 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 11659 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11718 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || || || || | | || || |||| |||||| Sbjct 11719 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11778 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| || ||||| || ||||||||||| || || || ||||||||| || Sbjct 11779 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 11829 >seq58 Length=66770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||||||||| || ||||| ||||| || || ||| | || Sbjct 35360 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGG 35419 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 35420 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 35469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916420107526