Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq653 320 2e-82 seq170 141 1e-28 seq136 122 1e-22 seq1104 118 1e-21 seq44 116 5e-21 seq185 102 1e-16 seq2245 87.8 2e-12 >seq653 Length=16906 Score = 320 bits (354), Expect = 2e-82 Identities = 1032/1584 (65%), Gaps = 26/1584 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || || || ||| Sbjct 5818 GGCATCGACCTGGGCACGACCTACTCGTGCGTGGGCGTGTGGCAGAACGACCGCGTGGAG 5759 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 5758 ATCATCGCCAACGACCAGGGCAACCGCACGACACCGTCCTACGTGGCCTTCACGGACACG 5699 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || || | || || || || || || ||| || |||||| | ||| || || Sbjct 5698 GAGCGCCTTATCGGCGACGCGGCCAAGAACCAGGTGGCCATGAACGCGCACAACACGGTG 5639 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| | |||||| | || || |||||||| | || |||| || || || Sbjct 5638 TTTGATGTCAAGCGTTTGATCGGGCGCAAGTTCACCGACCCTGAAGTGCAGTCGGACATC 5579 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 | | ||||| | | | |||| | || ||| || ||||||| | | || || | Sbjct 5578 AGGCACTGGCCGTTTAAAGTGGCTCGAGGTCCGGAGAATAAGCCGGA-AGTGGTGGTGCA 5520 Query 195605 TTTCAC-GGTGAGAAGAAACAATTTGCT-CCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 |||| |||||| || | ||| | ||||| || || ||||| |||||| || | | Sbjct 5519 GTTCAAAGGTGAGCAGGTG-ACTTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGGTCA 5461 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| |||| ||||| ||| ||| ||||| ||||| | ||||| ||||| | Sbjct 5460 AGATGCGCGAGATCGCGGAGGCTTACATTGGTAAGCAGGTGAAGAACGCAGTGGTGACGG 5401 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||||||||||| || || || | || ||||| | Sbjct 5400 TGCCGGCCTACTTCAACGACTCGCAGCGACAGGCGACCAAAGATGCCGGTGTCATTGCTG 5341 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 || | ||| || | || ||||| || || ||||| || || ||||| || ||||||| Sbjct 5340 GTTTGAACGTGCTGCGTATCATCAACGAGCCGACAGCCGCCGCTATTGCCTACGGTCTGG 5281 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||| |||| | ||| | || || ||||||| || || || || || || || | Sbjct 5280 ACAAG---AAGGGTGGAGAGCACAACGTGCTGATCTTCGACCTGGGCGGCGGCACCTTCG 5224 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 |||| || ||||| | |||||||| || || ||||| || ||||| || ||||| || | Sbjct 5223 ATGTGTCGCTTCTAACTATTGAAGACGGCATCTTCGAGGTGAAGGCCACCGCTGGCGACA 5164 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGTCTGATGAGTTC 196021 | || || || || ||||| ||||| || || || || ||||| | || ||| Sbjct 5163 CGCACCTGGGCGGCGAAGACTTCGACAACCGCCTCGTCGAGTTCTTTGT-GCAAGAATTC 5105 Query 196022 CGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACT 196081 || ||| || || ||||| | | || | | || || || || || | || Sbjct 5104 AAGCGCAAGCATCGCAAGGATATGACGGTGAACTCGCGCGCGCTGCGGCGTCTGCGTACG 5045 Query 196082 GCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGAT 196141 || || || |||||||| || || || || | || ||| | | |||||||| Sbjct 5044 GCGTGCGAGCGTGCCAAGCGTACACTGTCGATGTCTGCGCAAGCGTACATCGAGATTGAC 4985 Query 196142 TCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTA 196201 ||| || | || || | || ||| | | || ||||| || || || || || || | Sbjct 4984 TCGCTGCTGGATGGTGTCGATTTCAACTCTACCATTACGCGCGCGCGGTTCGAGGATCTT 4925 Query 196202 AACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAG 196261 ||| || ||| | ||| ||||| || || | || || || || ||| | ||| Sbjct 4924 TGTGGTGAATTCTTTCGCAAGACAATGGACCCAGTGGCGCAGGTTCTACGAGACTCGAAG 4865 Query 196262 ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321 || ||| |||| | || | || || ||||| || || || ||||| |||||| Sbjct 4864 CTGTCGAAGAGCCAGGTGAACGAGGTGGTGCTAGTGGGCGGCTCGACTCGTATCCCGAAG 4805 Query 196322 ATTCAACAGATGCT-TTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCC 196380 | || ||| || | || | ||| ||||| ||| | | ||| | |||||||| Sbjct 4804 GTGCAGCAGTTGTTGATCGA-CTTTTTCAACGGTAAGAAGCTCTTCAAGTCCATCAACCC 4746 Query 196381 GGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA 196440 ||| ||||| | || || ||||| | || ||||| || || || || |||| Sbjct 4745 GGACGAAGCCATAGCGTACGGTGCTACAGTGCAGGCGGCCATCCTGAGCGGCCATGAC-- 4688 Query 196441 TAATAACGTCCAA-------GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | ||||||| || || |||||||| || || || || | || || || Sbjct 4687 TCGT--CGTCCAAGTTGCAGGACCTGCTGCTACTGGACGTGGCGCCGCTGTCTCTTGGCT 4630 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | || || || || || || ||||| || | || | ||||| || |||| | | Sbjct 4629 TGGAGACGGCTGGCGGAGTCATGACCAAGCTGATCCCGCGCAACACCACGGTTCCAGCCA 4570 Query 196554 AGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 |||||| | |||| || || ||||| | || || || | ||||| || ||||| Sbjct 4569 AGAAGGCGC-AGTCGTTCTCGACGTACGCGGACAACCAGTCCGGTGTCTTGATCCAAGTG 4511 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGAC 196671 | || || || || || | ||||| ||||| || || || ||| || ||| Sbjct 4510 TTCGAGGGTGAGCGTTCGATGACCTGTGATAATCATCTTCTGGGCAAGTTTAACTTGGAC 4451 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || | ||||| || || ||| | || ||||| | || | Sbjct 4450 -GGCATCCCGCCCATGCCTCGCGGTGTCCCGCAAATTGACGTGACGTTCGACGTGGATGT 4392 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||| | || | ||| ||| | | ||||| | ||||| | Sbjct 4391 CAACGGCATTTTGAACGTGTCGGCCGTGGAGAAGTCGACGGGCAAGGAGAACAAGATCAT 4332 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || || || |||||||| ||| | ||| || || || || || |||||| | || || Sbjct 4331 CATCACGAACGACAAGGGCCGGTTATCTCAGTCCGAGATCGACCGCATGGTTGATGACGC 4272 Query 196852 GGAAAAGTACAGGGAAGAAGACGA 196875 || ||||||| ||| |||| || Sbjct 4271 TGAGAAGTACAAGGACCAAGATGA 4248 >seq170 Length=44224 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || |||||| | || || ||| |||| Sbjct 11825 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 11766 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || ||||| || ||||||||||| || || || ||| Sbjct 11765 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 11706 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || ||||||||||| || || || || || |||||| Sbjct 11705 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 11646 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| || || | || || || ||| Sbjct 11645 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGT 11598 >seq136 Length=48774 Score = 122 bits (134), Expect = 1e-22 Identities = 208/298 (70%), Gaps = 13/298 (4%) Strand=Plus/Minus Query 198660 TTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCA 198719 |||||||| |||||||||||||| ||| | ||| || || || || || || | || Sbjct 2958 TTCATCGAAATGTTCGTTGGTGTGGGTCCCTCGCGTGTACGTGACCTGTTCAAGGAGGCT 2899 Query 198720 CGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTG-----GTAAGA 198774 || | || ||||| || | ||||| ||||| ||||| ||||| | | | || Sbjct 2898 CGCGCGAACGCTCCATGCATTGTGTTCATCGATGAAATTGATGCTGTGGCCCGTGCACGA 2839 Query 198775 AGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTC 198834 ||| || | |||| || | | || ||||| |||||||| | ||| | |||||||| | Sbjct 2838 AGCAAGG-GCAACTTCTCCGGC-GGCAATGACGAGCGTGAAAACACGCTCAACCAGCTGC 2781 Query 198835 TCACTGAGATGGATGGTTTTGAC---AATGAGACTGGTATCGTGGTGATTGCTGCTACAA 198891 | |||||||||||||| || | |||| ||| | |||||| |||||| ||| | Sbjct 2780 TGGTGGAGATGGATGGTTTCAACTCGAGTGAG---GGTGTGGTGGTGCTTGCTGGTACGA 2724 Query 198892 ATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACCGTAAGAT 198949 | | ||||| || || | || | || |||||||||||||||||||| |||| Sbjct 2723 ACCGCGCCGATATTCTTGACAAGGCCATCCTGCGTCCCGGTCGATTCGACCGGCAGAT 2666 >seq1104 Length=8652 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || ||||| || || || ||| |||| Sbjct 5067 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 5008 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||| || || || |||| || || || || |||||||||||||| || || ||| Sbjct 5007 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 4948 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || ||| | || |||||| Sbjct 4947 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 4888 Query 172042 GTTCAAAAGG 172051 | || |||| Sbjct 4887 ATCCAGAAGG 4878 >seq44 Length=70920 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| || || || ||| | || Sbjct 20528 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 20469 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||| ||||| || ||||| ||| Sbjct 20468 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 20409 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 20408 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 20349 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||| | || || | ||||| || || Sbjct 20348 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 20302 >seq185 Length=41795 Score = 102 bits (112), Expect = 1e-16 Identities = 384/594 (65%), Gaps = 20/594 (3%) Strand=Plus/Plus Query 196268 AAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAA 196327 ||||| |||| || || ||||| || ||||| || || |||||||| || ||| | || Sbjct 26157 AAGTCGGAGGTGGACGAGATTGTGCTGGTGGGCGGTTCGACCCGTATCCCCAAGGTGCAG 26216 Query 196328 CAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGA----TCAACCCG 196381 ||| || | | || || |||||| ||||| | || | ||||| Sbjct 26217 CAGCTGAT--CAAGGACTACTTCAACGGCAAAGAGC----CCTCGCGCGGTGTGAACCCC 26270 Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT 196441 || || || ||||| || ||||| || || |||| | ||| || |||| || | Sbjct 26271 GACGAGGCTGTTGCCTACGGTGCTGCTGTGCAGGGCGGTATCCTG---GGTGGCGAGCAG 26327 Query 196442 AATAACGT--CCAAGATCTT-CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAA 196498 | || | ||||| | | || || | ||||| | || | |||| |||| |||| Sbjct 26328 GACGACCTGACCAAGGACGTGCTTCTGATCGATGTGGTGCCTCTGTCCCAGGGTATTGAG 26387 Query 196499 ACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAG 196558 || | |||||| || ||||| || | ||| | | ||||| || ||||| |||||| Sbjct 26388 ACTGTGGGTGGCGTCATGACCAAGCTCATTAACCGCAACACTGTGATCCCGACCAAGAAG 26447 Query 196559 GAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAA 196618 || ||| || || || || || || || | ||| | ||| || || | || Sbjct 26448 TCGCAGACCTTCTCGACCTACCAGGACAACCAGCCCGCTGTGCTTATCCAGGTGTTCGAG 26507 Query 196619 GGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGAT 196677 || || || | || || | ||||| |||| ||| || || | ||||| | || || | Sbjct 26508 GGCGAGCG-TGCCATGACCAAGGACAACCGTCTTCTGGGCAAGTTCGAGCTCACTGGCCT 26566 Query 196678 TCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGG 196737 || | || || | ||||| || |||||| | || ||||| || ||||| || || Sbjct 26567 GCCGCCCGCCCCGCGTGGTGTGCCCCAGATTGAGGTGACGTTCGAGATTGACGCCAACGG 26626 Query 196738 AATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTAC 196797 || || | || | ||||||||||||| | ||||| | || | ||| ||| || Sbjct 26627 TATCCTGCAGGTGTCCGCTGAGGACAAGGGCACGGGCAAGGCCGAGACGATCACGATCAC 26686 Query 196798 CAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || ||||| || || || ||||||| || || || ||||| || || || Sbjct 26687 TGCCGAGAAGGGCCGTCTGTCGCAGGAGGAGATCGACCGCATGGTCCAGGAGGC 26740 >seq2245 Length=2852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 167232 GTGGGGTTTGAACCCACG-AGACTTGC--GTC-AGCGGGTCTTAAGTCCGCCCCCTTAGA 167287 |||||||||||||||||| ||||| | ||| ||||| ||||||||||||||||||||| Sbjct 246 GTGGGGTTTGAACCCACGCAGACTGGAATGTCTAGCGGATCTTAAGTCCGCCCCCTTAGA 187 Query 167288 CCACTCGGGCA 167298 ||||||||||| Sbjct 186 CCACTCGGGCA 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657824885396640