Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq187 453 1e-122 seq18 187 2e-42 seq44 145 7e-30 seq170 143 3e-29 seq1104 131 2e-25 >seq187 Length=41780 Score = 453 bits (502), Expect = 1e-122 Identities = 1229/1851 (66%), Gaps = 66/1851 (4%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| |||||| ||||| |||| Sbjct 19237 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 19296 Query 148013 CATGAGCGTG-TA--CGTCGGGTGCGGCACAAACAGA---TTAAACGACTGGCTCTGGTC 148066 || || || || |||||||| ||||| | || || | ||||||||||||| Sbjct 19297 CA---GCTTGCTAATCGTCGGGT-CGGCA--ATGTGAATGTTCAGCGACTGGCTCTGGCA 19350 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 |||| | ||||||||||| || | || || | | ||| ||| |||||||| | Sbjct 19351 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19410 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||||| | ||||| || || |||||| | | |||||| ||||| | Sbjct 19411 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19470 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 || || | |||||| ||||||| || ||| | | | ||||||||||| || | Sbjct 19471 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19530 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || |||| ||||| | | ||||| || || |||||||| || |||| ||| Sbjct 19531 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19590 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 ||| |||| || | ||||||||||||||||||||||| || |||| || ||||| Sbjct 19591 CGACGTGTACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19650 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 ||| || || || ||||||||||| | ||| | || | | || ||| || || Sbjct 19651 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19710 Query 148427 CGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCC 148483 ||||| ||||| | || ||||| || ||| |||||||||| |||| | || || Sbjct 19711 AGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACC 19770 Query 148484 GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA 148543 ||| || || |||| | ||| |||||| || || || || | || || Sbjct 19771 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CA 19829 Query 148544 GCTCGC-CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CAGCGC 148600 | | ||| | | ||||||| ||||||||| || | | ||||||| || | Sbjct 19830 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGG- 19888 Query 148601 CGCCGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 || | ||| ||| ||| |||| || | | ||| || || || || ||||| | Sbjct 19889 -GCTTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 19946 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGT 148719 |||| | |||| || ||||| |||||||| |||||| ||| | || |||| Sbjct 19947 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGT 20006 Query 148720 GGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778 |||| ||| |||| ||||| |||| || || ||||||||| || | | |||| Sbjct 20007 AGTTGACGTCAATGACCTTGTTCAAG-TTCCGGGTCACCACCTTGGTCACCTCGTACAGC 20065 Query 148779 AATTCAAAATCGTACTTG---------TCATCTACGATGCATCGGTTCACGGCGATAGAG 148829 ||| | ||| ||| || || || | | | || | ||| | ||| Sbjct 20066 --TTC----TGGTAGTTGAACACTCCATCCTCCACAAA-CTTGGGG--AGGGCCACAGAC 20116 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || || |||||||| ||| |||||| || | ||||||| | |||||| ||||| Sbjct 20117 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 20176 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTG 148949 ||||| | |||| ||| | ||||| || || ||||| |||| |||||||||| Sbjct 20177 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 20236 Query 148950 TACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGG 149006 ||||||||| |||| |||| || || | ||||| |||| ||| |||| ||| Sbjct 20237 TACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA---CAGC 20293 Query 149007 TCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || | | | ||| || ||| ||||||| |||||| ||||| Sbjct 20294 TGCTGGGCATTGATCGTCTTGCGCGC-GCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 20352 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 ||||||| | ||||| |||| |||| ||| |||||| || | ||||| | || Sbjct 20353 CTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCT 20412 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 |||| ||||| ||| | ||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 20413 CCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAA 20472 Query 149186 GAGGT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 ||||| ||||||| ||||| ||| ||| ||| |||||| | || | | Sbjct 20473 GAGGTCGCGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCG 20530 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCG 149300 || | ||| |||||||||||||| | ||| | |||| || ||| ||||||||| || Sbjct 20531 AACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCT 20590 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 |||||||| || | ||| || ||| || || || | | ||| || || || || Sbjct 20591 CCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTG 20650 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTG-CCGCGCGCTCGCACTTTGTGCACGTTGAC 149419 | | ||||| || || ||| ||| || | || || | ||||||| | | Sbjct 20651 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTG-GCGCGGATGTTGTGCATACTAAT 20709 Query 149420 GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479 ||| || || ||| | |||| |||||| |||||| | |||||| ||| ||||| Sbjct 20710 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 20769 Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539 ||| || |||| || ||||| |||||| || ||||| ||| |||||| |||| Sbjct 20770 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 20829 Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599 |||||| || | ||||| | ||||| ||||| | |||| ||| | ||| || Sbjct 20830 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATA 20889 Query 149600 CGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 || | || | | ||||| | || || || | || |||||||| | ||| Sbjct 20890 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCAT 20949 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAG 149716 ||||| || |||||| | || ||||| | | | || |||||| || || Sbjct 20950 CTGCTGGGGGCGCTCCACGAC---CTTTCCGTTCACGCGGAAGAGGTAGCCCCGCTCGAG 21006 Query 149717 TGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||||| |||| ||||| | ||| |||||||| ||| ||||| ||||| Sbjct 21007 CGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGC 21057 >seq18 Length=94768 Score = 187 bits (206), Expect = 2e-42 Identities = 511/769 (66%), Gaps = 23/769 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| || ||| || | | ||| Sbjct 742 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCAT 801 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT--GTACGAGCAGT 120471 | ||||||||||| || |||| || || | || || || | | |||| ||||| Sbjct 802 CCAGTCGAACGGGTTCTTCACGTTGTAG-ATCTTGGATGCACCCAGTGAGTAC-AGCAGG 859 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||| ||||||| ||||||| | | ||||||||| | || | || Sbjct 860 CGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCC 919 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | ||||| | |||||| |||| || || | || || Sbjct 920 ACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGC 978 Query 120591 GAGCATAGTGTGGC---CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCA 120644 | ||| | ||| | |||| || ||||| | |||| ||||| ||||| Sbjct 979 GTGCA---CGCGGCTCTCCGGCAGCT--TGTTC--ACCAACTTCG--AGTACATGAGGCA 1029 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 ||| ||||||||||||| ||||||||| || || |||||||| || |||| || Sbjct 1030 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 1089 Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||||| ||| | |||||| |||| |||| | ||| ||||| ||||| | Sbjct 1090 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 1149 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824 |||||||||| ||| || || | || ||||| | | | || ||| Sbjct 1150 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 1209 Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884 |||||| | ||||| |||||| || ||||||||| ||| ||||| || ||| Sbjct 1210 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 1269 Query 120885 CAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTC 120944 || || ||| | | ||| || | | ||| ||||| ||||| || Sbjct 1270 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 1329 Query 120945 CGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCCAGCTCGGG 121004 || ||| | | |||||| | || | ||| ||| | | |||||| || | | Sbjct 1330 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 1389 Query 121005 CACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGA 121063 |||| | |||| | | ||| ||||| |||||||| | |||| ||| |||| Sbjct 1390 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 1448 Query 121064 AGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 |||| || |||||||||||||| ||||| ||||||| |||||| || || Sbjct 1449 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT 1497 >seq44 Length=70920 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 20332 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 20390 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| ||| || ||||| Sbjct 20391 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTT 20450 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | | ||| | ||||||||||| | |||| ||| ||||| |||| || Sbjct 20451 CACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGT 20510 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 20511 CTTCACGAAGATCTGCATG 20529 >seq170 Length=44224 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || |||| ||| || ||||||||||| Sbjct 11629 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCA 11688 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || ||||||||||| || ||||||||||||||||| || || ||||| Sbjct 11689 GCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTC 11748 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||| | ||||| || ||||| |||| ||| Sbjct 11749 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTC 11808 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 11809 TTCACGAAGATCTGCAT 11825 >seq1104 Length=8652 Score = 131 bits (144), Expect = 2e-25 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || ||||||||||| Sbjct 4912 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 4971 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||||| ||||| ||||| | |||| Sbjct 4972 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTGAT 5031 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 5032 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483393232928880