Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq170 102 2e-16 >seq170 Length=44224 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||| ||||| | | || || || || || |||||||| || || || || || || Sbjct 11597 TACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 11656 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | || || || |||||||| || || ||||| || || || || ||||| ||||| | Sbjct 11657 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11716 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| || ||||||||||| || || || || ||||| || || || || | Sbjct 11717 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 11776 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || | ||||| || || | || || || || |||||||| Sbjct 11777 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515165832433286