Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq463 125 6e-24 >seq463 Length=23304 Score = 125 bits (138), Expect = 6e-24 Identities = 194/277 (70%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| |||| || || || ||| | |||||||| ||||| || | || |||||| Sbjct 1688 ATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGACGGGGAGTTGTCG 1747 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 ||||| ||||| || || || || || ||||| || ||||| || || || |||||||| Sbjct 1748 TGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTAACATTGCAAGC 1807 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580 || |||||||||||| | | | ||||| || ||| || ||| | ||||| || | Sbjct 1808 TACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCTGGTGAATTTATT 1867 Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTA 20640 ||| || || ||||||||| | || || || || | || ||| | || ||| | Sbjct 1868 CACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTTCAAAAGCAGCTT 1927 Query 20641 ACACGACAACCAAAACAATTCCCAACTCTTCGCATTA 20677 || || ||| | ||||||||| |||| ||||| Sbjct 1928 ACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTA 1964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399161100186115