Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq774 143 1e-29 >seq774 Length=13269 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66839 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66898 |||| |||||| ||||||||| | | || || | ||||||||||| || ||||| ||| Sbjct 5772 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5713 Query 66899 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66958 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 5712 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 5653 Query 66959 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 67018 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5652 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5593 Query 67019 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 67078 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 5592 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 5533 Query 67079 ATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 67135 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5532 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5475 Query 67136 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 67195 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5474 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5419 Query 67196 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 67255 || |||| || | || ||| | | ||||| || || ||| |||| | || |||| Sbjct 5418 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 5359 Query 67256 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAG 67315 | | ||||||||||| || |||||||||| || ||||| || | |||| Sbjct 5358 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5299 Query 67316 AACAAGCTGGCCCCGCC 67332 ||||||||||| |||| Sbjct 5298 AACAAGCTGGCGTCGCC 5282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242840468277884