Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-36 >seq3 Length=140463 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 133812 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 133753 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| ||||||| | |||| || |||| Sbjct 133752 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 133693 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| || | || ||| || || Sbjct 133692 GCGTGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 133633 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || ||||| || Sbjct 133632 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGG 133573 Query 16672 CCG 16674 ||| Sbjct 133572 CCG 133570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070896356951