Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq44 113 4e-20 seq137 111 1e-19 >seq44 Length=74761 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||||| |||||||| || |||||||||||| | Sbjct 55116 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55057 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 55056 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 54997 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||||||||| | | | | | ||| |||||| Sbjct 54996 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 54937 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| |||||||| || || |||| ||| || || || |||||||| || Sbjct 54936 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 54887 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || |||||||| || |||||||||||| | Sbjct 55344 CCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55285 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 55284 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55225 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||||||||| | | | | | ||| |||||| Sbjct 55224 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 55165 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| ||| || || || |||||||| Sbjct 55164 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55118 >seq137 Length=47942 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||||| |||||||| || |||||||||||| | Sbjct 15316 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15375 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | || ||||| || |||| || ||||| ||||| || Sbjct 15376 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15435 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||||| ||||||||| | | | | | ||| |||||| Sbjct 15436 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15495 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||| || || || |||| || || || || |||||||| ||| Sbjct 15496 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 15546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405064761493930