Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq39 102 6e-17 seq137 93.3 3e-14 seq44 87.8 1e-12 >seq39 Length=75724 Score = 102 bits (112), Expect = 6e-17 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || |||||||||||||||||||||||||| || | Sbjct 36041 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 36100 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 36101 AAGAGTG-CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 36154 >seq137 Length=47942 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 15316 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 15374 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 15375 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15434 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 15435 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 15464 >seq44 Length=74761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || ||||| ||||||||| |||||||| || || Sbjct 55116 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 55058 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 55057 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 54998 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 54997 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 54968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039621895014