Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq177 187 2e-42 seq3531 120 3e-22 seq44 111 2e-19 seq734 100 3e-16 seq137 96.9 3e-15 >seq177 Length=41916 Score = 187 bits (206), Expect = 2e-42 Identities = 624/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCT 153654 ||| | ||||||||| || || || ||| ||| |||| || || |||||| || |||| Sbjct 20243 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20301 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 || ||| | |||||| | || ||| | || ||||| || ||||| ||| Sbjct 20302 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20361 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---A 153771 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20362 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20421 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || || ||| ||||| ||||||| || Sbjct 20422 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20478 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||||||||| |||| ||| ||| ||||| || || || | Sbjct 20479 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20538 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | || |||| | ||| || | || || |||||||||||| || ||||| | Sbjct 20539 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20598 Query 153952 GCGCGTACATGAGGT--CGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 | ||||| | ||||| ||||||| |||| || | || | ||||| ||| | Sbjct 20599 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20655 Query 154009 TGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | | || | | | | ||| |||||||| || || | ||||| ||| | | ||||| Sbjct 20656 CCAGGAACTCGA-ACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20714 Query 154068 CGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||||| ||| ||||| || || | ||| || | | |||||||| | || |||||| Sbjct 20715 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20774 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | ||| | | | ||||| || ||| | |||| |||||| | | Sbjct 20775 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20834 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 |||| | ||| |||||| || ||| | |||| || ||| ||||| | ||||| Sbjct 20835 TGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 20894 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||| || || ||||| | | | | |||| ||||||||| ||| ||| Sbjct 20895 TCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGC 20954 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 ||| |||| || || |||||| ||||| ||||||||||||| | | || | Sbjct 20955 GGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGAC 21014 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | ||||| | | || | | ||| || | |||||| || ||||| ||| Sbjct 21015 ATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACG 21074 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCA 154484 ||||||| ||| ||||| || || || |||| || || | ||||| || || Sbjct 21075 CGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAGCCT 21134 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCC 154544 || || || ||| | ||||| || | ||| ||||| || | || || ||||||| Sbjct 21135 CGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCC 21194 Query 154545 G 154545 | Sbjct 21195 G 21195 >seq3531 Length=1496 Score = 120 bits (132), Expect = 3e-22 Identities = 490/755 (65%), Gaps = 23/755 (3%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||| | || |||||||||||| |||| |||||||| ||| ||| ||||||||| Sbjct 514 ACGAGCGCCACTTCATCAAGCACGTGCTGGCATTCTTCGCTGCCAGCGACGGCATCGTGA 573 Query 52153 ACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCAATACTTT 52211 || ||||| ||| | | |||| | || | | | ||||| | | ||| Sbjct 574 ACGAGAACCTGG-CGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTC 632 Query 52212 TATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAG 52271 || || || | ||||||| | | ||| ||||| ||||| ||||| || || Sbjct 633 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGAC 692 Query 52272 CAGCTGATAAAAGATGAGCACGAGCGCGA-CACGCTGCTGAATGCGTTCGAGCACG-TGC 52329 | || || || | ||| || ||| ||||| ||| ||||| ||| | | Sbjct 693 ACGTACATCAAGGACGCCGTGGAGAAGGATCACT-TGCTGCGTGCCATCGAG-ACGATCC 750 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG- 52388 ||||||| || ||||| | ||||| | |||||| | || | | | || Sbjct 751 CGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGT--GTGACCCTCGT-GTTTCGT 807 Query 52389 -CTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 || ||| |||| || |||| |||||| || |||||| | || || || || || Sbjct 808 CCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCT 867 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | ||||||| | | || | | ||| | ||||| || |||| ||| |||| Sbjct 868 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACG 927 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || ||||| || ||||||||||||| ||||||||| ||| || | Sbjct 928 AGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGT 987 Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGG 52623 |||| | || || |||| | | || | | || | || || |||| Sbjct 988 TGGTGAAC---AAGCTGC---CGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGG 1041 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGC 52683 || || | ||||| | | | | |||| || || |||||| | ||||||||| | Sbjct 1042 TGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTG 1101 Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAG 52742 | ||||||| ||||||||||||| ||||| || || ||| || || || ||| Sbjct 1102 CGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCAT 1161 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 |||| | || ||||| || ||||| || | ||| | | || ||||| ||||| Sbjct 1162 CCAAGAT-CTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGC 1220 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| || |||||||| Sbjct 1221 AAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 >seq44 Length=74761 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || || || | | |||||||| || |||||||||||||| Sbjct 55117 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 55058 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 55057 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 54998 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 54997 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 54938 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 54937 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 54889 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || || | | |||||||| || ||||||||||||||| Sbjct 55344 CCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 55285 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 55284 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 55225 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 55224 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 55165 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 55164 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55117 >seq734 Length=14282 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 10508 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10567 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 10568 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 10626 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || ||| || || | ||| | || || || ||||| || || ||| Sbjct 10627 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10686 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 10687 AAGATCTGCATG 10698 >seq137 Length=47942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 15315 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 15374 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 15375 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15434 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 15435 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15494 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||| ||| || || || |||||||| Sbjct 15495 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233201161040