Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq774 147 1e-30 >seq774 Length=13269 Score = 147 bits (162), Expect = 1e-30 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66831 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66890 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 5772 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5713 Query 66891 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66950 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 5712 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 5653 Query 66951 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 67010 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5652 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5593 Query 67011 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 67070 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 5592 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 5533 Query 67071 ATGTCACAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 67127 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5532 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5475 Query 67128 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 67187 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5474 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5419 Query 67188 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 67247 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 5418 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 5359 Query 67248 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67307 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 5358 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5299 Query 67308 AACAAGCTGGCCCCGCC 67324 ||||||||||| |||| Sbjct 5298 AACAAGCTGGCGTCGCC 5282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244593967679880