Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq177 188 7e-43 seq137 95.1 1e-14 seq44 91.5 1e-13 >seq177 Length=41916 Score = 188 bits (208), Expect = 7e-43 Identities = 628/964 (65%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 20243 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20301 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 20302 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20361 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20362 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20421 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 20422 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20478 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| ||| ||||||||||| |||| ||| || ||||| || || || | Sbjct 20479 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20538 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || |||| || ||| ||| | || || ||| |||||||| || ||||||| Sbjct 20539 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20598 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | ||||| | || |||||||| |||| || | | || | ||||| || | Sbjct 20599 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20655 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | | | | | ||| |||||||| || || | ||||| ||| | || ||||| Sbjct 20656 CCAGGAACTCGA-ACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20714 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| |||| ||| || ||| || || || | || |||||| Sbjct 20715 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20774 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 20775 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20834 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| | ||| |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 20835 TGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 20893 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||||| | ||||| || || ||||| | | | | |||| |||||||| ||| Sbjct 20894 GTCGT--AAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGC 20951 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 20952 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 21011 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | |||||| | | || | | |||||| | |||||| |||||||| Sbjct 21012 GACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCC 21071 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 |||||||||| ||| ||||| || || || | || | | ||| | || || || Sbjct 21072 ACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAG 21131 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || || || || ||| | || ||||| | ||| ||||| || | |||| |||| Sbjct 21132 CCTCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATG 21191 Query 148405 GCCG 148408 |||| Sbjct 21192 GCCG 21195 >seq137 Length=47942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15321 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15380 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15381 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15440 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15441 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 15500 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 15501 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15542 >seq44 Length=74761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 55111 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 55052 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 55051 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 54992 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | |||||||| || | Sbjct 54991 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 54932 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || |||| || || | ||| ||||||||| Sbjct 54931 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 54889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||||||| || || Sbjct 55332 CGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 55273 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || ||||| || || Sbjct 55272 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 55213 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | Sbjct 55212 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 55153 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | ||| ||||||||| Sbjct 55152 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 55117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583157388520