Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq177 168 8e-37 seq3531 116 5e-21 seq419 91.5 2e-13 seq4585 86.0 8e-12 >seq177 Length=41916 Score = 168 bits (186), Expect = 8e-37 Identities = 735/1144 (64%), Gaps = 43/1144 (4%) Strand=Plus/Plus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| ||||||||||||| || || || | ||||| || | ||| ||||| || ||| Sbjct 20058 ATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGAC 20117 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 || ||||| ||| ||||| || | || ||||||||| ||| | || ||| Sbjct 20118 TTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTC 20177 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 20178 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 20231 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 20232 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 20291 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTA 111340 || | ||| || || |||||| ||| ||||| || | |||| ||||| Sbjct 20292 TCCATAATCTCGCAGCACAAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 20348 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| |||| ||| |||||||| |||||| | ||| |||||||| |||| | Sbjct 20349 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCG 20408 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCC 111454 | || || || ||| | || ||||| || || ||| || || || ||| Sbjct 20409 TCCAGGATGGCGAACCACA-----GCTGCTGGG-CATTGATCGTCTTGCGCGCGCGCCCC 20462 Query 111455 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACC 111513 ||| ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 20463 TCCTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCC 20521 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || |||| | || |||||||| ||| | || | || || ||||||||||| Sbjct 20522 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 20581 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 111632 || || || | |||||| | | ||||| || | | | | || | |||| || | Sbjct 20582 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGT 20640 Query 111633 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692 |||| || | ||| |||||||| | | || |||||||| ||||| || |||| | Sbjct 20641 GGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGG 20700 Query 111693 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 ||| || || || || | || | || | |||||||| || ||| | || || | Sbjct 20701 CGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGA 20760 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTA 111808 | | ||||| || || || || | ||| || || || || || || || | || Sbjct 20761 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTC 20819 Query 111809 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 111868 |||| | | | || ||| || |||||||| || |||||||| ||||| ||| Sbjct 20820 GTGGCGCGGATGTTGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCG 20879 Query 111869 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 111928 |||| | | || || | || || || | || ||||| |||| |||| | ||||| Sbjct 20880 CACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAA 20939 Query 111929 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---A 111985 || |||| |||||| | || || || || || ||||| || || || ||||| | Sbjct 20940 CACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTA 20999 Query 111986 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 | |||||| || ||||| || || || | || | | | ||||||| | | Sbjct 21000 AAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 21056 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCG 112105 || || || | || || ||||||| ||| | ||| ||| |||| || | || | Sbjct 21057 TGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTC 21116 Query 112106 AGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGT 112163 | || ||||| |||| |||||| || |||| || ||||| | | ||| ||| Sbjct 21117 A--CGCGGAAGAGGTAGCCTCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21174 Query 112164 CCCG 112167 |||| Sbjct 21175 CCCG 21178 >seq3531 Length=1496 Score = 116 bits (128), Expect = 5e-21 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1138 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1017 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 963 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 962 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 903 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 902 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 843 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | || || || | | |||| ||| || | ||| |||| | Sbjct 842 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 784 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 783 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq419 Length=25110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 |||||| ||||| | || || || || ||| | ||| |||||||| || |||||||| Sbjct 12668 AAGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACC 12727 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| |||||||| ||||| || | ||||| || || || || | || || |||||||| Sbjct 12728 GTACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACC 12787 Query 182780 CTCCGTGACAATGAGAGTACACT 182802 ||| || | ||| || | |||| Sbjct 12788 CTCAGTCAAAATCAGCGAGCACT 12810 >seq4585 Length=1034 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 213 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 154 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 153 CCGGTAGGAGCT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627995048167200