Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq177 338 7e-88 seq44 131 2e-25 seq734 127 2e-24 seq419 125 8e-24 seq3531 123 3e-23 seq137 111 2e-19 >seq177 Length=41916 Score = 338 bits (374), Expect = 7e-88 Identities = 1139/1748 (65%), Gaps = 54/1748 (3%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| |||||||||||| |||| | |||||| Sbjct 19367 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 19426 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| || || |||| | ||| |||||||| ||||| ||| || Sbjct 19427 GGACGTCAGCTTGCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCA 19486 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 ||| | || ||||| || |||| || || | | | ||| || || ||||| || Sbjct 19487 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19546 Query 80214 TGTACGATACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACC 80270 || ||| || | || || |||||| | || || ||||| |||||| Sbjct 19547 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19606 Query 80271 GTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 ||| | ||| || || || |||| |||||||| || |||| | ||| || || Sbjct 19607 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19666 Query 80331 CACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTT 80390 || |||| |||||| | || ||||| || || || ||| || |||| ||| Sbjct 19667 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19726 Query 80391 TGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGG 80450 | ||||| ||||| | | ||| ||||| || | ||||||||||| ||| || || Sbjct 19727 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19786 Query 80451 CATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCT---TCTTGATATCCT--CGCGC 80505 |||||| | || | || || || || | |||||||| || | | |||| |||| Sbjct 19787 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19846 Query 80506 A----AATCTGACCAAAAATCAACCCCA--ACGCTGTGA--CCCCACATGTCGTGCTGCA 80557 | |||| ||| | | ||| | ||| |||| |||||||||||| ||| | Sbjct 19847 AGCCCAATC---CCACA----AGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGA 19899 Query 80558 AGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617 |||| |||| || || || ||| ||||||||||||||||||| | |||||| | Sbjct 19900 AGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGA 19959 Query 80618 GCTCACACGA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 ||| ||| ||||||| | |||| || || ||| |||| | | |||| | Sbjct 19960 TCTCCATCGAGGTCTCCATA---GAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGA 20016 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 | || || || ||| ||||||| || ||| | || || | || || || | Sbjct 20017 GTTCACGGGCTTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGAC 20076 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATT 80793 |||| ||||| || | | ||||||||||||| |||| || | || | |||||| | Sbjct 20077 CCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC-GCCTCCTCCACG 20135 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| |||| || ||||| ||||| ||| || || || ||| || || || Sbjct 20136 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 20195 Query 80854 TGAAGTTTCTGAAAGTCGAATTGGTTCC--CCTTCACAAATGCCGGAAGGCTCAGGGACG 80911 | || ||||| ||| ||| ||| ||| |||||| || ||| || |||| Sbjct 20196 TACAGCTTCTGGTAGTTGAA--CACTCCATCCTCCACAAACTTGGGGAGGGCCACAGACG 20253 Query 80912 CCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 |||| |||||||| |||||||| || | || |||| | || || |||||| | Sbjct 20254 CCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGT 20313 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGT 81031 | || || || || ||||| | |||||| |||||| |||| |||||||||| Sbjct 20314 TGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGT 20373 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 | |||| |||| || ||||| | ||| | | ||||||||| ||| | || Sbjct 20374 ACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCT 20433 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCG 81150 | || |||| | |||||| || || | | ||||| |||| || || ||| Sbjct 20434 GGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCG 20492 Query 81151 AACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 |||| | | || || ||| | ||| ||| || ||||| | ||| ||| Sbjct 20493 AACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCAC 20552 Query 81211 TCGGTGTCGTTC---TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 | || ||||| || ||| ||||||||| || |||| ||| || ||| ||| Sbjct 20553 T---TGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAG 20609 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 |||||||| ||| | ||| | || ||||| ||||| ||| || || || | Sbjct 20610 AGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAAC 20669 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCC 81384 | ||| || ||||| |||||||| || | ||||| ||| || ||||| | || ||| Sbjct 20670 ACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCC 20729 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| || || ||||| || | || || || | || ||| |||||||| || | || Sbjct 20730 TGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGT-TGGA 20788 Query 81445 TGA-CCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACC 81503 ||| |||||||| || ||| | ||||||| | ||| || || || Sbjct 20789 TGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCC 20848 Query 81504 GATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTC 81563 || || || | |||||| || || || ||| | || | || || ||||| ||||| Sbjct 20849 AATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTC 20908 Query 81564 GATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCC 81623 || || | | |||| | |||| |||||| |||| ||| || | | ||| Sbjct 20909 AATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCC 20968 Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACATCAGGTCATAGG 81682 ||| || || || || || |||||||| | ||| ||| | |||||| || ||||| | Sbjct 20969 GGCGTTAAAGAGCGTGGGCGTCGCGTGCGT-AAAGAACATCTGTGACATGAGCTCATACG 21027 Query 81683 T-TTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741 | | | || ||| ||| || || | ||||||||| | || || ||||| | ||| Sbjct 21028 TGTGCAGTGCCGCCTGG-ATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATC 21086 Query 81742 TACTGGGG 81749 | |||||| Sbjct 21087 TGCTGGGG 21094 >seq44 Length=74761 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 55118 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 55177 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 55178 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 55237 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 55238 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 55296 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | || ||||||||||||| ||| Sbjct 55297 CATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGGA 55345 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 54890 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 54949 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 54950 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 55009 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 55010 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 55068 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 55069 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 55116 >seq734 Length=14282 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 10700 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCG 10641 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 10640 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAC 10581 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 10580 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 10521 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 10520 AACATCCAGAAGG 10508 >seq419 Length=25110 Score = 125 bits (138), Expect = 8e-24 Identities = 210/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 31950 TGAAGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAA 32009 || ||||| | |||| || | || |||| |||||||| ||| || ||||| || Sbjct 12044 TGCAGATAACCAGCGATCGCTGCCCTCGGTGGTTGACGGCCTGAAGATCTCGCAGCGTAA 11985 Query 32010 GGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTC 32069 |||| | | ||| ||||| || || || |||| || | |||||||| |||||| | Sbjct 11984 GGTGCTTTTCGCATGCCTGAAACGCAAGCTAACGAGCGAGGTTAAGGTGGCACAGCTGGC 11925 Query 32070 GGGCTACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACC 32127 ||||||| |||| |||| ||||| || ||||| ||||| || || || || || Sbjct 11924 GGGCTACT--GCAGTGAGCATACGGCTTACCACCATGGCGAAGCTTCACTGCACTCGACG 11867 Query 32128 ATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCT 32187 ||||||||| | || ||| | || || || | || ||||| | | | || || Sbjct 11866 ATTGTCAACATGGCGCAGGATTTCGTGGGATCCAACAACCTTCCGCTGTTGTATCCTTCA 11807 Query 32188 GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTC 32247 || || || || ||||| || || ||||||||||| || ||| | |||||||||||| Sbjct 11806 GGTCAATTCGGTACCCGTCTGCAAGGAGGCAAGGATGCCGCTAGCCCTCGTTACATCTTC 11747 Query 32248 AC 32249 || Sbjct 11746 AC 11745 >seq3531 Length=1496 Score = 123 bits (136), Expect = 3e-23 Identities = 350/533 (66%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || |||||||||| ||||||| | || || | Sbjct 418 TGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGG 477 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || || | ||||||| ||||| | | ||| || | |||||||||||| Sbjct 478 TGCACGACCTGAAGGACTGGGGGAACCTGA-CGGACAACGAGCGCCACTTCATCAAGCAC 536 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || || ||||||||||| | || ||||| || ||| ||||| ||| | || || Sbjct 537 GTGCTGGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTC 596 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | || || || || | || ||||| || | ||||| | | ||| | ||| Sbjct 597 AGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 656 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||| ||||| |||| |||| || | ||| | || ||| Sbjct 657 AACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAG 716 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 |||||| || | | || || ||||| | || || || ||||| ||| Sbjct 717 AAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGG 776 Query 64678 GCCATCCGGTGGA-TGAA--TCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCC 64734 || || |||| ||| ||||| ||||| | ||||||| || || ||| Sbjct 777 GCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCC 836 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 ||||| || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 837 GCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGC 896 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| ||||| |||||| || ||||||||||| ||| ||||||||||| Sbjct 897 GGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq137 Length=47942 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || | || || ||| | Sbjct 15542 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15483 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| ||||||||||||||||| || || || || |||||| Sbjct 15482 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 15423 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||| ||||| || || || | || || || ||| ||||| || Sbjct 15422 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGC-GACTACAA 15364 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || || || Sbjct 15363 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 15316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276844361840