Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq137 149 1e-30 seq734 145 2e-29 seq44 138 3e-27 seq39 86.0 1e-11 >seq137 Length=47942 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || ||| Sbjct 15331 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 15390 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || |||||||| || | |||||||||||| Sbjct 15391 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 15450 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || | ||||||||| Sbjct 15451 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTC 15510 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | |||||| || || | |||||| || Sbjct 15511 TTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 15545 >seq734 Length=14282 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 10510 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 10569 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 10570 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10629 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 10630 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10689 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 10690 ATCTGCAT 10697 >seq44 Length=74761 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || || ||||| || |||||||| || || || || Sbjct 55338 CGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 55279 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| || || || ||||| || || | || Sbjct 55278 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 55219 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| ||||| || || |||||||| ||||||| ||| || || || || || Sbjct 55218 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 55159 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | ||||| || || | |||||| Sbjct 55158 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 55118 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || || || | || || Sbjct 55101 AGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 55042 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 55041 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 54982 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| ||||||| ||| || || || || || ||||| ||| Sbjct 54981 TGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTC 54922 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| || || | |||||| || Sbjct 54921 TTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 54887 >seq39 Length=75724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||| || || || || || || ||| |||| || || || ||| Sbjct 36228 CCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCG 36287 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| ||||| |||||||| ||||| || || | ||||||||| || Sbjct 36288 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTCTG 36337 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || || ||||| || |||| ||| || | || || Sbjct 36057 AGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 36116 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 36117 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 36167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159082093354055