Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq181 271 2e-67 seq453 143 7e-29 >seq181 Length=41916 Score = 271 bits (300), Expect = 2e-67 Identities = 631/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 21001 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 20942 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 20941 TGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 20882 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 20881 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 20822 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 20821 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 20762 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 20761 GTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTC 20702 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || ||||| || || ||| Sbjct 20701 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 20642 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || || ||||| || || ||||| | || | Sbjct 20641 CACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTG 20582 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | | | || ||| || || ||||| | || | Sbjct 20581 TTCATGAAGCGTGTGGAAGC--GAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 20524 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||| ||||| | | |||| ||||| ||||| || || Sbjct 20523 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGG 20464 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||| || || ||||| || || ||| |||| ||||| |||||| |||| ||| Sbjct 20463 AGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 20404 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || || |||||||||||| |||| Sbjct 20403 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 20344 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| || || || | ||||||| | || ||||||||| || ||||| Sbjct 20343 AGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGT 20284 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 | ||||| ||| || || || ||||| ||||| | || || || |||||| | | Sbjct 20283 CGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGG 20224 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 |||| || || ||||| | || || || || ||| | | || | || | Sbjct 20223 ATGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGA 20164 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| || ||| || || || || | | || || || || || ||||| Sbjct 20163 ACAAGGTCATTGACGTCAACTACTA-CCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGC 20105 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| ||||| |||| || ||||| ||||| || | ||||| Sbjct 20104 CACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTAT 20058 >seq453 Length=23987 Score = 143 bits (158), Expect = 7e-29 Identities = 319/471 (68%), Gaps = 6/471 (1%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || || Sbjct 1498 CGAAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTA 1557 Query 111542 CAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATT 111599 || ||||||| || | || | |||||| || || || | || || ||| Sbjct 1558 CACGGACATGCAC-ACGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAG-GTGATT 1615 Query 111600 GATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAA 111658 | ||| | | || ||||| || || || || | || ||| |||||||| Sbjct 1616 CA-CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGC 1674 Query 111659 TGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGA 111718 || || | | |||||||| ||||| || || | | ||||| || || || || Sbjct 1675 TGATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGA 1734 Query 111719 CGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTT 111778 |||| | | || || || ||||| ||||| || || || || ||||||||||| ||||| Sbjct 1735 CGGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTT 1794 Query 111779 TAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACC 111838 ||| |||||||| ||||| || ||||| | || | || || | || | ||||| Sbjct 1795 TAACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACC 1854 Query 111839 GGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACT 111898 |||||||| |||||||||||||| || |||||||| || |||||| |||| | || Sbjct 1855 TGGTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCT 1914 Query 111899 TAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 | ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 1915 TCAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303276199124570