Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq32 228 1e-54 seq3464 217 3e-51 seq326 178 2e-39 seq53 158 2e-33 seq281 140 6e-28 seq767 129 1e-24 seq729 125 1e-23 seq407 114 2e-20 seq545 102 2e-16 seq181 91.5 3e-13 >seq32 Length=84201 Score = 228 bits (252), Expect = 1e-54 Identities = 413/591 (70%), Gaps = 16/591 (3%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGC-TCAGGAGACTGGAGCATTTTCCACATTGCTTC 268269 || || |||| ||||| |||| |||| | | | || ||||| |||||| ||| Sbjct 42620 CCGGTGGCAACAACAAAATCCTGTGGCGTGTCGTGT-TGAAGCATGCGCCACATGCATTC 42562 Query 268270 GACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCA 268329 |||||||| || || |||||||| || ||||| ||||||| ||| || | || ||||| Sbjct 42561 CACATAGTCACGGGCGTGGCCCCAGTCACGCTTGGCGTCCAGGTTGCCCACAAAGAGGCA 42502 Query 268330 TTTCTGCTTGCCGAGCTTCACGCGTGC--AAGACCGC--GAGTGATTTTTCGGGTCACGA 268385 ||| | || |||| ||| | ||||| | ||||| || |||||||||| Sbjct 42501 CCTCTCAATCCCCG----CACGAATGCGCACCACCGCACGCGTGATCTTGCGGGTCACGA 42446 Query 268386 ACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATG 268444 | || || ||| | || |||||||||||||| || || ||||| ||| ||| |||| Sbjct 42445 AGGTTGGTCCGCGTCGCGGACTCTCGTGGTTGAACAGAATCCCGTT-CACGGCGTACATC 42387 Query 268445 CCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTAC 268504 || || || || |||| |||||| || |||| | |||||| ||| || || ||||| Sbjct 42386 CCGTAGGCTTCTCGGTGGTTCACCACACTCCAAAACGCAAACTGCTTCGCTACACCGTAC 42327 Query 268505 GGAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAA 268563 || || || || ||||| ||||| || || | || ||| | || | |||||||| || Sbjct 42326 GGTGAGCGCGGGTGGAACGGCGT-GTCTTCATCCTGTGGGGTGGCTTGCACTTTGCCGAA 42268 Query 268564 GAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGAT 268623 | ||| || || |||||||||||| || | | ||||| || || | || | Sbjct 42267 TAATTCGCTCGTAGACGCTTGGTAGAACCGCGTCGAATGCTCGAGCCCACACGTGCGCAA 42208 Query 268624 TGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTC 268683 | |||| ||| || | ||||| | || ||||| || || ||||| | |||||| Sbjct 42207 ACACGTCAGCAGACGCAGCGCTCCCAGCGCGTCGACGTCTGCCGTGTACTCGGCCATCTC 42148 Query 268684 GAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTG 268743 || || || | |||||| | ||||||||||| || || ||||| |||| ||| | Sbjct 42147 AAACGAGACTTTAACATGGGACATCGCGCCCAGGTTGTACACTTCATCGGGTTGGACGCG 42088 Query 268744 CTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | |||||||| ||| || |||| | ||| ||||||||||||||||||| Sbjct 42087 CGCCACGATCTGGCAC-AGATTCGACGCGTCCGTGAGGTCTCCGTAGTGCA 42038 >seq3464 Length=1496 Score = 217 bits (240), Expect = 3e-51 Identities = 618/938 (66%), Gaps = 29/938 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATGACGCCC------GC 9946 ||| ||||||||||| | | ||||| | ||| ||||| | ||| ||| || Sbjct 1319 TTAAAAGTCTGCGTCCAGAGTGAACACCTGGTCCTCGGC---CGCGACACCCACACCAGC 1263 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 ||| |||||| || || |||||||||||||| |||||||| || || || | Sbjct 1262 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1203 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAA 10066 ||||| |||| || ||||||| || | ||||| ||| |||| | Sbjct 1202 ATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAG 1143 Query 10067 AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT 10126 | |||||| |||||||||||||||||||||| ||| || | ||||||||||| |||| Sbjct 1142 CAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCA- 1084 Query 10127 GCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGA 10185 || || ||||| | ||||| | ||| || | || | | || || || |||| Sbjct 1083 GCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGA 1024 Query 10186 TGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCC 10243 | | | | | || || || |||||||||| | | |||||| |||| ||| | Sbjct 1023 T-CGCGTGCACGCGGCTCTCCGG-CAGCTTGTTCACCAACTTCGAGTACATGAGGCACGC 966 Query 10244 AAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGG 10303 || | | ||| | ||||||||| |||||||||| |||||| || || | |||||| || Sbjct 965 GAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGG 906 Query 10304 CATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACC 10363 |||||| || || || |||||||| |||| |||||| || || ||||| | || || Sbjct 905 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCC 846 Query 10364 CTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGA---AAAGTA 10420 ||||||| | | || | || ||||| | | |||| | || | | | | Sbjct 845 CTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCA 786 Query 10421 TTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGC---CTCGA 10476 || ||| ||||| |||||||| ||||| |||||||||||||| || | | Sbjct 785 CTT-GAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCA 727 Query 10477 AGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCT 10536 || | | || | ||| |||||| || | || | ||||| ||||| || Sbjct 726 AGTGATCCTTCTCCACGG---CGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCT 670 Query 10537 CGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCG 10596 | ||||| | |||| || |||| | ||||||| || ||| || | Sbjct 669 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTT 610 Query 10597 TGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAA 10656 || || | | ||||| | ||||||||| |||| ||||| |||||| | || | Sbjct 609 GCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 10657 AGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGT 10716 |||| | || | ||||||||||||||||||||| | || |||| || | ||||| Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT---CCCCCAGT 493 Query 10717 CTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCT 10776 | || || || || | | |||||| | |||||||| | || | ||||||| Sbjct 492 CCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCT 433 Query 10777 TGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 |||||||||| | | |||| | | | |||| |||||| Sbjct 432 TGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAAC 395 >seq326 Length=29665 Score = 178 bits (196), Expect = 2e-39 Identities = 442/664 (67%), Gaps = 24/664 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | |||| ||| ||||| |||||| ||||||||||| Sbjct 14419 CGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGGTGAGACTCAATGTGGTGGAAAGCG 14360 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 |||||||| || || || | |||||| || ||||||||||| ||| | || || Sbjct 14359 TGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGGCCACTCGTGGGC 14300 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||||| | || | ||| || ||||| ||||| |||| | Sbjct 14299 TCAACCTCACCCGTCAGCATTTTGATCATGGTCGACTTTCCGGCACCGTTGGGTCCAAGC 14240 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCTCAGG 225216 ||| | || ||| |||| || || | ||| | |||| | || | || || Sbjct 14239 ACGGCGATACGGCTCGACAAAGCGCACGTCACCGAAATGTTGTTGATCGACGGCTTCGGG 14180 Query 225217 G--CCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 | |||| | |||| | | || | ||| | |||||| ||||| Sbjct 14179 GTGCCAGGGTACTGGTACGAACAGTTCGTCAGACGAA------TGATGGGTTTACCCTTG 14126 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | || | | ||||| |||||||| |||||| |||| ||| ||| | Sbjct 14125 TTCTTGATGTCGGCGAGGAAACCGGGCTCCGGGAACGTGAACTT---CACGTTGTCAGAC 14069 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || ||||||||||||| ||||| || Sbjct 14068 TCCAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAAAGCAGAAAGGTTGCCC 14009 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | ||||| | | ||||||| |||| || | || || | ||| Sbjct 14008 TTGTAGATCTTCAGCTTACG---CGTCTCGTAGTGAATGATGTTGGTACAGACAGTGTCG 13952 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||||| ||||| |||||| || |||||||| ||||| | | |||| Sbjct 13951 AGGAAGCCAGAGTCGTGCGACACCATGATGCTCGTCACGTTCGGCAGGCTCGTCAGGTAG 13892 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| |||| |||| ||||| || || || || || |||||| Sbjct 13891 TTCTCCAGCCAGGCGACGTTCTTGACATCCAAATGGTTCGTCGGCTCATCAAGGAGCAGG 13832 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 |||||||| | || ||||| || | || || ||||| ||||| || || || Sbjct 13831 ATGTCAGCCTTCTGCAGCATGGCACGAGCAAGCTCAAGTTTCATCTTCCAACCACCCGAA 13772 Query 225629 AGGG 225632 |||| Sbjct 13771 AGGG 13768 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||| | ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 14963 GTGGGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGAGCACCAAG 14904 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||| ||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 14903 CGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 14844 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| || || | ||| | ||||||||||||||| ||||| || || || || ||||| Sbjct 14843 CATGGCAGCTCCCAGCACAACCTTCACCTTCTGACCACCAGACAGACCACGCATGCGCGA 14784 Query 224629 GTGAGT 224634 ||| || Sbjct 14783 GTGCGT 14778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| |||| || || | |||||||||||| ||||| | Sbjct 13625 GTTGTGCTCAACGAACACAGTCTTCAGCTCGGA-GCGGCTGGGGAAGCCCTCGAGCTGAC 13567 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || || || | ||| || ||| || |||||||| ||| || |||| Sbjct 13566 CGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGCACAGACCGT 13507 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | ||||| | | |||||| || ||| | ||||| |||| Sbjct 13506 AACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACCGTAGG 13447 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTCC 225985 |||| ||||| ||||| | |||||||||| Sbjct 13446 CAAGCGAGAATTCGCAGTTGCACAGGTCC 13418 >seq53 Length=70416 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||| |||||||| |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 50865 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 50806 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || |||||||| Sbjct 50805 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 50746 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || Sbjct 50745 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 50686 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 50685 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50636 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 50634 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50575 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 50574 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50515 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || || Sbjct 50514 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 50455 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 50454 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50408 >seq281 Length=32176 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| ||||| ||||| || |||||||| || ||| Sbjct 1 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || || Sbjct 61 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 120 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || ||| ||| ||||| | ||| | | || || Sbjct 121 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| | ||||| ||||| |||||||| Sbjct 181 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 227 >seq767 Length=14288 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || ||||| || | || || || | |||||| |||||||| || Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || ||||||||||||||||| || || || |||||| || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | ||||| |||| |||||||| || ||||| |||||||| || || Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 3593 ATCTGCATGAT 3583 >seq729 Length=15304 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || || || |||| |||| ||| ||||| ||||| || |||||||| || Sbjct 222 TTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 163 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | || ||||| | |||||| || ||||| || || | || ||||| Sbjct 162 GTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTC 103 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || |||||||||||||| ||||| || ||| ||| ||||| | ||| | | Sbjct 102 AGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGG 43 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || || ||||||||||| || || ||||| | ||||| || Sbjct 42 CTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 1 >seq407 Length=26157 Score = 114 bits (126), Expect = 2e-20 Identities = 255/377 (68%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 || ||||| || ||||||||||| || ||| | || ||||||||||||||||| |||||| Sbjct 20547 ATCGACACCATCATGCACTTTGCAGCCCAGTCTCACGTGGACAACTCGTTCGGGAACTCG 20606 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | | || | || || ||| | | || |||||||| || ||||| |||||||| Sbjct 20607 ATCGAGTTCAGCAAGACCAATATATTGGGCACCCACGTGCTGCTGGAGGCTGCGAGGCTG 20666 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACG-----GCGAGA 173276 || || || || |||||||| ||||| || ||||| || |||| | |||| Sbjct 20667 CAT---GGAGTGAAGAGGTTCATCCATGTGAGCACGGACGAGGTGTACGGAGAAGGGAGA 20723 Query 173277 GCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCAT 173336 | | || || | || | || || || || || ||||| || ||||| | Sbjct 20724 CCCGACTCCGCTCCGATGACG-----GAAGATCA--TGT-GCTGGAGCCGACGAACCCGT 20775 Query 173337 ATGCAGCAGCCAAGGCTGGTGCCGAAATGAT-GGCACGTGCATATCACACATCGTACAAG 173395 | || || | || || || ||||| | | | || | | || ||| |||| | Sbjct 20776 ACGCGGCCACGAAAGCGGGGGCCGAGTTCCTCGTCAAG-ACGTACCACCGCTCGTTCGGC 20834 Query 173396 CTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAA 173455 || || |||| | |||||| |||| || ||||| ||||||||||||| ||| || || Sbjct 20835 CTGCCGACCATCATCACGCGCAGCAATAACGTGTACGGCCCGCATCAGTACCCGGAGAAG 20894 Query 173456 ATGATCCCAAAATTTAT 173472 | ||||| || ||||| Sbjct 20895 CTCATCCCCAAGTTTAT 20911 >seq545 Length=20719 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 || |||||||| | ||||||| ||| ||||||||||||||||||| | | | ||| Sbjct 3654 AGAGCGCCAAGTGCGGCGCGGTCCAGGTAGTTCGTCGGCTCATCCAGCACCAGCAGGTGC 3595 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 |||| | ||||| || ||| | | || ||||||||||||||||| || || |||||| Sbjct 3594 GGGCGGTTCCACATCGCAGCAGCGATGACAAGCTTCACCTTCTGACCACCCGACAGGCCG 3535 Query 224618 CGGATC 224623 |||||| Sbjct 3534 CGGATC 3529 >seq181 Length=41916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 346/531 (65%), Gaps = 23/531 (4%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCG--GCACAAAGATTGCT-G 31757 ||||||||| || || | || ||||| || | ||||||| |||||| ||||| | Sbjct 20262 CACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG--TTGCTCG 20319 Query 31758 CCCGTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTTCACGCTGTCCTTGTTG 31814 || ||| |||||| || |||| |||| || ||| | |||||||| Sbjct 20320 AGCG-GATCGTGCCGAGGTT---CTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAC 20375 Query 31815 AGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGC 31874 |||| | | |||| ||||||||| ||||||| | | || || ||| | | | Sbjct 20376 AGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG 20435 Query 31875 GCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || |||| || ||| | ||| |||||||| |||||| ||||| |||| | Sbjct 20436 GCATTGATCGTCTTGCG-CGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTCTCGAA 20494 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||| | ||| || ||| || ||||| ||| |||||| ||| || ||| Sbjct 20495 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTT 20554 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | | | || || || |||||||||||||| ||| | ||||| ||||| || || | Sbjct 20555 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20614 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | ||||| || ||| | || ||||| || ||| |||||| || | | ||| Sbjct 20615 GCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTC 20674 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 || ||| ||||| ||||| | |||||| || || ||||| || || ||||||| Sbjct 20675 GGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTC 20734 Query 32171 TGCGTATGCAGATGTCGTGTC---GTACACCTTCAGCATGGGTACGATGCC 32218 | || || | | |||||| | | ||| |||||||||| | ||| || Sbjct 20735 CACATA-GCGG--GCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 20782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921569003502200