Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq281 123 6e-23 seq767 120 7e-22 seq53 114 3e-20 seq729 107 5e-18 >seq281 Length=32176 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| |||||||| | || || || ||||| Sbjct 37 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 96 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||||| ||||| || ||||| |||||| |||||||| Sbjct 97 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 156 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || | ||||||||||| || |||| |||||| ||| Sbjct 157 TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACG 216 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 217 AAGATCTGCAT 227 >seq767 Length=14288 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | || || ||||| || |||||||||||| || || || || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || ||||| || |||||||| ||||| || ||||| ||||| || || Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 3593 ATCTGCATGAT 3583 >seq53 Length=70416 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 50598 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 50539 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || || ||||||||| |||||||| Sbjct 50538 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 50479 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||| ||||| || |||| ||||| ||| Sbjct 50478 TCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACG 50419 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 50418 AAGATCTGCAT 50408 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 50826 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 50767 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || || ||||||||| |||||||| Sbjct 50766 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 50707 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||| ||||| || |||| ||||| ||| Sbjct 50706 TCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACG 50647 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 50646 AAGATCTGCAT 50636 >seq729 Length=15304 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| |||||||| | || || || ||||| Sbjct 179 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 120 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||||| ||||| || ||||| |||||| |||||||| Sbjct 119 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 60 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || || || || || | ||||||||||| || |||| |||||| || Sbjct 59 TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179584345117530