Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq181 372 3e-98 >seq181 Length=41916 Score = 372 bits (412), Expect = 3e-98 Identities = 1108/1697 (65%), Gaps = 55/1697 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || || ||||| || || ||| || ||| |||| |||||||||||| Sbjct 20992 GCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTG 20933 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| |||||| | || ||| | Sbjct 20932 CTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGC 20873 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || || ||| | ||| || | || |||| | | Sbjct 20872 ATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGC 20813 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || || | |||||||| || |||| ||||| |||||||||| Sbjct 20812 TACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAT 20753 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | || || || ||||| |||| Sbjct 20752 GACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTAC 20693 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 20692 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAAC 20633 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||||||||||||||| ||||| || || || || ||||| Sbjct 20632 GAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 20573 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || ||| | ||||| ||||| || |||||||| |||||||| | | Sbjct 20572 CGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTAC 20513 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || ||||| |||| | ||||| | |||| | Sbjct 20512 GA--GTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCG 20455 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| ||| |||||| ||| | |||| Sbjct 20454 CGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGA 20395 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||| Sbjct 20394 CGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACC 20335 Query 94550 TCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| ||||| || ||||| ||||||| | ||||| || || || | Sbjct 20334 TCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCG 20278 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||||||| || | ||| ||| || ||| |||| Sbjct 20277 ATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--G 20220 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | ||| | ||| |||| | |||| |||| Sbjct 20219 AGTGTTCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGA 20176 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | |||| |||||| ||| || ||| |||| ||||||||| ||||||| || | Sbjct 20175 CCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGT 20116 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || |||||||||||| ||||||| || | | Sbjct 20115 CCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCC 20056 Query 94844 TGATG-CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATT 94898 | ||| | || | | ||| | ||| || || | || ||||||| || Sbjct 20055 TCATGAACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTT 20001 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || |||| | ||| | || | | | |||| ||| || Sbjct 20000 CGAGACGATCTACTACGCTTCTATGGAGACCTCGATGGAGATCGCCA---AGGAGCTGGG 19944 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCT 95017 || |||| |||||| |||||| ||| | | |||| || || ||||||||| | | Sbjct 19943 CCCGTACGAGACGTTCCAGGGATCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGT 19885 Query 95018 GGGGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||| || | | | ||||| ||| || |||| || || | | || |||| Sbjct 19884 GGGGCGTCACCCCGTCTTCGGGCTTGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA 19825 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| | ||| |||| || ||||| || |||||||| || || ||||| |||| Sbjct 19824 AGCACGGCATCCGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGA 19765 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | | |||||||| ||||| |||| || | ||| || ||| |||||||| | || |||| Sbjct 19764 TTTTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGC 19705 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | || || || ||| | || | |||||| ||||| | ||| |||| ||||| Sbjct 19704 TGGCTGGTGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCA 19645 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 | ||| |||| ||||| | || | | |||||||| ||||| | Sbjct 19644 TCTGGACGCCTGAGGTGCGCAACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAAGGT-- 19587 Query 95315 CGCAA---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | || || ||||| | |||||| | |||||||| |||||||||||| |||| Sbjct 19586 -GAAATCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 19528 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 19527 AGGCCGTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGA 19468 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || ||||| || | | || | ||||||||| ||||||| |||| Sbjct 19467 ACATTCACATTGCCGACCCGACGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGA 19408 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 ||||| |||||||| || ||||| || |||| | || || || ||| |||| | Sbjct 19407 AGAAGGGGCTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCC 19348 Query 95552 AGTTCGCCCTAGAAAAG 95568 ||||| || | || ||| Sbjct 19347 AGTTCACCGTGGACAAG 19331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494694536974600