Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq453 199 3e-46 >seq453 Length=23987 Score = 199 bits (220), Expect = 3e-46 Identities = 445/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Minus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 1914 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 1855 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 1854 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 1795 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| ||| Sbjct 1794 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 1735 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || |||||| || || || | |||||||||| || || ||||| | || || Sbjct 1734 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 1675 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 30099 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 1674 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 1615 Query 30100 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30158 ||| | ||| |||| ||||| ||| || | |||||| | ||||||||| Sbjct 1614 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGT 1559 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 |||| || || ||||| | ||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 1558 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 1499 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 1498 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 1439 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 1438 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 1379 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 30395 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 1378 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 1319 Query 30396 GAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 30455 || | | || ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 1318 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 1259 Query 30456 CC 30457 || Sbjct 1258 CC 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594517574855