Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq281 116 7e-21 seq53 111 3e-19 seq729 107 4e-18 >seq281 Length=32176 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| ||||| || ||||| || || || || Sbjct 1 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| || || || | || || || || || Sbjct 61 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 120 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || ||||| || ||||| || || || |||| || || || || Sbjct 121 ATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 179 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 180 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 227 >seq53 Length=70416 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || |||||||| ||||| || ||||| || || || || Sbjct 50634 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50575 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || || || ||||| || | || || || || || Sbjct 50574 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50515 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||| || || ||||| || || || || | || ||| || || Sbjct 50514 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCAC 50456 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||||||||| || || |||||||| Sbjct 50455 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50408 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || |||||||| ||||| || ||||| || || || || || | | ||| Sbjct 50851 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 50792 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || || || || || ||||| Sbjct 50791 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 50732 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||| || || ||||| || || || || | || ||| || || |||| || | Sbjct 50731 GTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 50673 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| ||||||||||| || || |||||||| Sbjct 50672 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50636 >seq729 Length=15304 Score = 107 bits (118), Expect = 4e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | |||||| ||||| || ||||| || || || || Sbjct 217 TACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 158 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||||| || || || ||||| || || || | || || || || | Sbjct 157 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 98 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || ||||| || ||||| || || || |||| || || || Sbjct 97 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCC 39 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || ||||| || ||||||||||| ||||| ||||| || Sbjct 38 ACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981768893271265