Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq53 116 3e-21 seq281 98.7 8e-16 seq729 87.8 2e-12 >seq53 Length=70416 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | |||||| || || || || |||||||||| Sbjct 50636 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 50577 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || |||||| | || |||||||| || || |||| Sbjct 50576 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 50517 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || | |||| | | || | | ||| | | || | Sbjct 50516 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCA 50457 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 50456 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50408 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27012 TAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || || || || ||||| | |||| ||||| || | |||||| || || || || ||| Sbjct 50871 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTG 50812 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||||||| |||| |||| || ||||| || |||||| | || |||||||| || Sbjct 50811 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 50752 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || ||||| | ||||| || || ||| || | |||| | | || | | ||| | Sbjct 50751 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 50692 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 50691 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50636 >seq281 Length=32176 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||| || | |||||| || || || || |||||||||||| Sbjct 1 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| ||||| || || ||| |||| || ||||| || || ||||| Sbjct 61 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 120 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || || | |||| | | || | | ||| | | || || Sbjct 121 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | |||||||||| ||| ||||| ||||| ||||| Sbjct 181 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 227 >seq729 Length=15304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 27014 ATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 |||| || || || |||| |||| |||| || | |||||| || || || || |||| Sbjct 223 ATTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGT 164 Query 27073 AGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGAT 27132 ||||||||| |||| ||||||| ||||| || || ||| |||| || ||||| || | Sbjct 163 AGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGT 104 Query 27133 CCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGG 27192 | ||||| | || || || || || || | |||| | | || | | ||| | | Sbjct 103 CAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACG 44 Query 27193 CTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || || || | || || | |||||||||| ||| ||||| Sbjct 43 GCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910395854120