Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3464 109 6e-19 seq325 84.2 3e-11 >seq3464 Length=1496 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq325 Length=29681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || || ||||| || ||||||| |||||| || | || ||| | ||||| | || | Sbjct 24505 GCGTCGATCTCGTCGATGAAGATGATGCACGGA-GCCTTCCGCTTGGCCGACT-CGAACA 24448 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || ||||||||||| ||| |||||||| | || | | | | || Sbjct 24447 GGTCGCGCACGCGGCGCGCGCCCACACCTACATACATCTCCTCGAACTCGGAGCCCGACG 24388 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| ||| | || || |||||||| ||||| ||||| ||||| |||| Sbjct 24387 AGTAGAAGAAGGGCACACCGGCCTCGCCGGCAATGGCACGGGCCAGAAGCGTCTTGCCCG 24328 Query 9882 TACCTGG 9888 | ||||| Sbjct 24327 TGCCTGG 24321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583227007327400