Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq281 98.7 3e-15 seq4114 91.5 4e-13 seq729 91.5 4e-13 >seq281 Length=32176 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || |||||||| || || || || || || | || || || ||| Sbjct 16 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 75 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||| || || || || ||||| ||||| || || ||||| || ||| Sbjct 76 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 135 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 |||||||| || || || || ||||| || || || || || || | || | ||| Sbjct 136 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTC 195 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || || |||||||| Sbjct 196 TTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 227 >seq4114 Length=1183 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1152 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1093 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1092 CCCTGCTTCTCCA 1080 >seq729 Length=15304 Score = 91.5 bits (100), Expect = 4e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||| ||||| | | || || || || || |||||||| || || || || || || Sbjct 217 TACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 158 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | || || || |||||||| || || ||||| || || || || ||||| ||||| | Sbjct 157 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 98 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| || ||||||||||| || || || || ||||| || || || || | Sbjct 97 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 38 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGT 140713 | || | || | ||||| || || Sbjct 37 CGTCCAAGGTGATCGTCTTGCCCGT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515164415196905