Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq281 158 3e-33 seq53 156 1e-32 seq729 152 1e-31 seq767 120 7e-22 >seq281 Length=32176 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 6 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 65 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 66 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 125 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||||| ||||| | ||| || | |||||||| || Sbjct 126 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 185 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||||||||| || | ||| | ||||| || Sbjct 186 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 230 >seq53 Length=70416 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 50856 CGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 50797 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 50796 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 50737 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | | Sbjct 50736 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 50677 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||||||||| || || | ||| | ||||| Sbjct 50676 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50636 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 50629 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 50570 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 50569 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 50510 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | Sbjct 50509 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 50450 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||||||||||||| || || | ||| | ||||| || Sbjct 50449 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 50405 >seq729 Length=15304 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 210 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 151 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 150 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 91 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||||| ||||| | ||| || | |||||||| || Sbjct 90 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 31 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||||||||||||||| || Sbjct 30 GGTGATCGTCTTGCCCGTCAAAGTCTT 4 >seq767 Length=14288 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| |||||| Sbjct 3743 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCC 3684 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | || ||||| | |||| Sbjct 3683 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTG 3624 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 3623 ATGGTCTTGCCCGTCA 3608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192460380416690