Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933455.1_202017-01-04] 4,635 sequences; 39,297,625 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq53 167 2e-36 seq281 161 9e-35 seq767 154 1e-32 seq729 143 2e-29 seq42 131 2e-25 >seq53 Length=70416 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 50862 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50803 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 50802 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50743 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| ||| | | | | ||| | |||||| Sbjct 50742 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCAC 50684 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| || || || ||||||| |||||| ||||| ||||||||| Sbjct 50683 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 50635 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 50635 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 50576 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 50575 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 50516 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 50515 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCA 50457 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| || || || ||||||| |||||| ||||| ||||||||||| Sbjct 50456 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 50405 >seq281 Length=32176 Score = 161 bits (178), Expect = 9e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 1 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 61 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 120 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||||| |||||| ||| | | | | ||| || |||||| Sbjct 121 ATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 179 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || ||||| || ||||||| ||||| ||||| |||||||| || Sbjct 180 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 230 >seq767 Length=14288 Score = 154 bits (170), Expect = 1e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | |||| || ||||||||| |||||| ||||| || | Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTG 3657 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || ||| || |||| ||| || || || |||||||| ||||| || Sbjct 3656 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 3597 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 3596 AAGATCTGCATG 3585 >seq729 Length=15304 Score = 143 bits (158), Expect = 2e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 215 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 156 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 155 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 96 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||||| |||||| ||| | | | | ||| || |||||| Sbjct 95 ATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 37 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 |||| || ||||| || ||||||| ||||| || Sbjct 36 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 1 >seq42 Length=75748 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||||||||| ||||| Sbjct 39708 CCACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCC 39649 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | | Sbjct 39648 GAAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGG 39589 Query 41753 GG 41754 || Sbjct 39588 GG 39587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462277215262000