Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq464 194 2e-44 >seq464 Length=23305 Score = 194 bits (214), Expect = 2e-44 Identities = 396/586 (68%), Gaps = 2/586 (0%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || |||||||| || | ||||| || || || || Sbjct 1914 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 1855 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | | || | | || || || | || ||||| | |||||| || ||||| Sbjct 1854 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 1795 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| ||||||||||||||| ||| || || | ||||||| Sbjct 1794 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 1735 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 ||||||||||||| ||||| | | |||||| || ||||| ||||| || ||| || Sbjct 1734 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 1675 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCT 145983 || |||||||| || | | |||| || | | | |||||| | | || Sbjct 1674 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 1615 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTA 146042 |||| || ||||||||||||||||| || ||| || | | || | |||| ||| Sbjct 1614 ATCACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCG-CGTGCATGTCCGTGTA 1556 Query 146043 CGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCT 146102 | ||| || || || | ||||||||| |||||||| || || ||||| || || | Sbjct 1555 CCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTCGCG 1496 Query 146103 GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGAC 146162 | || || | | | | | || |||||||| || |||||||||| | | Sbjct 1495 CGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTGAAT 1436 Query 146163 GCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | || || ||| | | | |||| || || |||||||| |||||||| || Sbjct 1435 GTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTCCTC 1376 Query 146223 GAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || | |||||| || | |||||| || ||||| |||||| Sbjct 1375 CGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAAC 1330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590037132087120