Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq4102 794 0.0 seq3381 248 3e-61 seq939 179 1e-40 >seq4102 Length=1424 Score = 794 bits (880), Expect = 0.0 Identities = 870/1174 (74%), Gaps = 0/1174 (0%) Strand=Plus/Minus Query 42039 CCTGCAGGGCGTCGAGCCAGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGA 42098 ||||||||||||| | | | ||| | | ||||||||||||||| ||||||||| Sbjct 1343 CCTGCAGGGCGTCCTGGGACGCGGGGCGGTCATAGGGGCGCTCGTAGACGGGGCCGTCGT 1284 Query 42099 CGGCGACCGTGGACGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGAC 42158 ||| || ||| ||| |||||||| |||||| ||| || || ||||||| || || | Sbjct 1283 GGGCCACGGTGCGCGGATCCACGTCCACGATCACCTCGCCGTGGTAGTCGATCACCAGCC 1224 Query 42159 GGCCGTCGCCGGTGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGG 42218 ||||| | | ||||||||||||| | ||| |||||| |||||| | | |||| | Sbjct 1223 GGCCGGTGTCCGTGACCTCGCCGATCCACGAGTACTCCACGTCCCACCGGTCCATGACCG 1164 Query 42219 CGAGGAACGCGTCGAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCG 42278 | ||| || |||| |||| | || | ||| | |||||||||||||||||| ||||| | Sbjct 1163 CCTCGAAGGCCTCGACCTTCTCGGGGGTGACCACGGCCATCATCCGCTCCTGGGACTCGG 1104 Query 42279 ACATGAGGATCTCCTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGA 42338 ||||||||||||| | | || |||||||| ||||| || ||||| | ||| || | Sbjct 1103 ACATGAGGATCTCACCCGGGGTCAGCGAGGGATCGCGCAGCAGCACCTCGTCCAGGTTCA 1044 Query 42339 CGTGCATTCCGCTGTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAG 42398 | |||| |||| || ||||||| ||| |||||| ||||||||||||||||| || | Sbjct 1043 CCCGCATCCCGCCGTCCCCGTTGGAGGCCAGCTCGGAGGTGGCGCAGGAGATGCCCGCCG 984 Query 42399 CCCCGAGGTCCTGGATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGA 42458 |||||||||||||||| |||| ||||| | | ||||||||||||||||||||| Sbjct 983 CCCCGAGGTCCTGGATGCCCTCCACCAGGGAGGACTTGAACAGCTCCAGGCAGCACTCGA 924 Query 42459 TGAGCACCTTCTCGGCGAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 42518 ||||||||||||| |||||||||| Sbjct 923 TGAGCACCTTCTCCGCGAAGGGGTCACCCACCTGCACGGCGGGGCGCTTGGAGGGCTTGG 864 Query 42519 NNNNNNNNNNNNNNNNNGAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGC 42578 || || || | ||||||||||||||||||||||| || |||| Sbjct 863 AGTCGTCGAAGGACTCCGACGCCAGCACGGACGCGCCGCCGATCCCGTCACCGCCGGTGC 804 Query 42579 GCGCCGCGAAGAGGACGACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCT 42638 |||| ||||||| || ||| ||||||| ||| | |||||||| || || ||||| Sbjct 803 GCGCTCCGAAGAGCACCACCCTGTTGCCCGTGCCGGAGGCGTTGGCCAGGCGGATGTCCT 744 Query 42639 CGTGCCGGAGCACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCAT 42698 |||| || | ||||||||| ||||| ||||||||||| || ||| |||| ||| || | Sbjct 743 CGTGGCGCATCACGCCCACGGCCAGCGCGTTGACCAGGGGGTTGCCCTGGTAGCAGGGGT 684 Query 42699 CGAACACGGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGC 42758 ||||| | ||||||||||||||||||||| || || ||||||||||| || | || Sbjct 683 CGAACTCCACCTCGCCGCCGATGTTCGGCAGCCCCAGCGAGTTGCCGTAGCCGCCCACGC 624 Query 42759 CGCTGGTGACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCA 42818 || || |||||||| || ||| ||||| |||| |||| |||||||||||||| Sbjct 623 CGGCCACGATCCCGTGCACCACGCGCTGGGTGTCCGGGTGGTCGATCGCGCCGAAGCGCA 564 Query 42819 GGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGC 42878 | | |||||| || || || ||||| |||||||||||||||||||| || ||||| |||| Sbjct 563 GCGGGTCCATCACGGCCACGGGGCGGGCGCCCATGGAGATGATGTCCCGCACGATCCCGC 504 Query 42879 CCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCG 42938 |||| ||||| ||||| |||||| ||||||| | | | || ||||||||||| ||| Sbjct 503 CCACGCCCGTGGCCGCACCCTGGTAGGGCTCCACGTAGGACGGGTGGTTGTGGGACTCGA 444 Query 42939 CCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCC 42998 ||||||||| || ||||| || || |||| ||| |||| || ||||||| ||| || | Sbjct 443 TCTTGAACGTCACGGCCCAGCCGTCCCCGATGTCCGTGACACCGGCGTTCTCCCCGATGC 384 Query 42999 CGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGA 43058 | ||||||||| || ||||||||| |||| |||||||| |||||| |||| | Sbjct 383 CCACCATGAGGTTCTGGCGCATCTCCTCCGTGACCTTCTCGCCGAACTGGCGCAGGTGCA 324 Query 43059 GCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGC 43118 |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 323 CCTTGGAGGACTTGTAGGAGCAGTGCTCGGACCACATCACGGAGTACATGGCCAGCTCCG 264 Query 43119 CCGAGGTGGGGCGGCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGC 43178 ||| ||||||||||||||| |||||||||||||| | | || ||||| | || || |||| Sbjct 263 CCGCGGTGGGGCGGCGGCCCAGGATCTCCTTGATGCGCTCGAACTCGGCCTCGTTCAGGC 204 Query 43179 CCAGCGCCGCGTAGGGCTGCTCCTTCTCCGGAGT 43212 ||||| | || ||||| |||| | ||||| || Sbjct 203 CCAGCTCGGCCCAGGGCAGCTCGGTGTCCGGGGT 170 >seq3381 Length=1808 Score = 248 bits (274), Expect = 3e-61 Identities = 281/377 (75%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 41423 GCCCAGGCGGAGCCGGAAAGCTCCGTGGACGTCACGCCGAGCAGATAGATGTTCTGGCCC 41482 ||||| |||||||| ||||| | ||| | || | || ||||| |||||| Sbjct 1431 GCCCATTCGGAGCCGTCCAGCTCGTCCGCGGTCTCTCCCATGAGGTAGATCGCCTGGCCG 1490 Query 41483 TCGTCCTGCCATCCCGAGGGTATGCGGCGCGAGACGTCGTCGATGAGGCCGAGCACGCCC 41542 || || |||| |||||||| ||||||||| ||||||||||| | ||| | || | || Sbjct 1491 TCCTCGCGCCAGCCCGAGGGGGTGCGGCGCGTGACGTCGTCGAACACGCCCATCATGGCC 1550 Query 41543 ACGAGAGGAGTGGGGTGGATCGGCACGTCGCCGGTCTGGTTGTAGAACGAGACGTTCCCG 41602 || | || ||||||| ||| | ||| |||| ||||||||||||| || ||||| ||| Sbjct 1551 ACCACCGGGGTGGGGTTGATGGCCACACCGCCCGTCTGGTTGTAGAGGGACACGTTGCCG 1610 Query 41603 CCCGTGACCGGGGTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCG 41662 |||||||| || ||| | ||| | ||||||||| ||||| || ||| | || || Sbjct 1611 CCCGTGACGGGCACGCCGATGGCCTGGCAGCCGTCCGCGAGACCTCGCACGGCCTCCGCG 1670 Query 41663 AACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCA 41722 ||||||||||| || || || | ||| ||||||||||||||||||||||||| |||||| Sbjct 1671 AACTGCCACATCACGTCCGGGTCCTCGGGGGAGCCGAAGTTCAGGCAGTCGGAGACCGCC 1730 Query 41723 GTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCG 41782 ||| |||||| | | || ||||||||||| |||| ||||| |||||||| || Sbjct 1731 ACGGGGCGGGCGCCCGCGGTGGCCACGTTGCGGTACGCCTGCGCGAGCGCGAGCTGGGCA 1790 Query 41783 CCCGCGTACGGGTCGAG 41799 || ||||||||| || Sbjct 1791 CCGTGGTACGGGTCCAG 1807 >seq939 Length=10641 Score = 179 bits (198), Expect = 1e-40 Identities = 264/363 (73%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 ||||| || || ||||| ||||| || | || || || || |||||||| || || || Sbjct 9527 ATGGCTGGCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGC 9468 Query 11066 TACACGCAGAACGG-GCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTT 11124 | ||||| | ||| || |||| |||| ||||||||| | || || || |||||| |||| Sbjct 9467 TTCACGCCGTCCGGAGCCGCCG-TGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTT 9409 Query 11125 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGT 11183 |||||| ||| ||||||||||| ||| ||| | || ||| | || ||| || |||| Sbjct 9408 CGACCGGCAGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGC-TCGGTGT 9350 Query 11184 GGCGCGAGTTCGCGGAGCACGTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCAT 11243 |||| ||| || ||| ||||||||| || || |||||||||| || || |||| | Sbjct 9349 GGCGTGAGGCGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCG--T 9292 Query 11244 CC--GGACGCCTGAAGCAGCGCTCCTACCAGGACCGCG--AGGGCAACAACCGCACCGCG 11299 || || ||||| ||| ||||| ||| || ||| | |||| | | ||||||| Sbjct 9291 CCAGGGCCGCCTCAAGGCACGCTCGTACGAG-ACCAAGGAAGGGGAGCG-CCGCACCAGC 9234 Query 11300 ATCGAGCTCGAGGTGGACGAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACC 11359 | |||||| || ||||||||||||||||| | | |||||||| || || ||| | Sbjct 9233 ACCGAGCTGGAAGTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCCAAGATCAAC 9174 Query 11360 CGG 11362 ||| Sbjct 9173 CGG 9171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148236932428972