Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq2387 304 6e-78 >seq2387 Length=2809 Score = 304 bits (336), Expect = 6e-78 Identities = 687/1018 (67%), Gaps = 36/1018 (4%) Strand=Plus/Minus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 || ||| | ||||| | | || |||||||| | ||| || ||||| ||||| ||||| Sbjct 1770 GGGTTGGCCCGGTTCACGGTGTCCTCGAACATGATGTACGGGTAGCCGGACTCGAACTGC 1711 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCA 60008 ||||| || | ||||||||| | || || |||| ||| | ||| | ||| | Sbjct 1710 ACCTCCGCCACGGTCTGGAAGAACTCGCGGGCGTTGATCTTGCGCTTGGTGATGCGGGAG 1651 Query 60009 TCTTTTAGCCACGTGTCGTACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTAC 60068 || | | | | || |||| ||||| | ||| | || | | | | ||||| Sbjct 1650 TCGTCCACCATCTCGTGGTACTTCTCGCTCACGTTCACGTCCGCGAAGGGCACGCCGTAG 1591 Query 60069 ACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGG 60128 | | | ||| || || ||||| ||| ||| || | | | |||||| || | Sbjct 1590 ATGCGCTCCACGTCGTAGGGGGAGAACAGGTACATGTCCTGGTTGTTCTTGGCCAGCTCG 1531 Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 ||||||| || || | || || || |||||||| || || || |||||||||||||| Sbjct 1530 AACGTGATGTCCGGGATGACCACGCCCAGGGAGAGGGTTTTGATGCGGATCTTCTCGTCC 1471 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 ||||| || |||||||| |||||||| |||||||| |||||||| |||| || || Sbjct 1470 GCGTTCTCCCGCTTGGTGTCCAGGAAGTTGAGGATGTCCGGGTGGTGCGCGTGCAGGTAC 1411 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 ||||| || |||||||| | |||||||| ||||| | |||||||||| || || || Sbjct 1410 ACCGCACCGGCGCCCTGGCGAGCACCCAGCTGGTTCGCGTAGGAGAAGGAGTCCTCGAGC 1351 Query 60309 ATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTC 60366 | ||||||||| ||||| || || |||| ||| ||||||| | ||| |||||||| | Sbjct 1350 AGCTTCATCACGGGGATCACACCCGAGGACTG--GTTCTCGATCATCTTGATCGGAGCAC 1293 Query 60367 CTGCCTCGCGGAGGTTGGAGA-ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGG 60425 | | |||||| |||||| | | || ||| || || || || ||||| |||||||| Sbjct 1292 CCGACTCGCGCAGGTTGCTCAGCGCGAACGCC-ACACCACCGCCGCGCTTGGACAGCTGC 1234 Query 60426 AG---AGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCT-GAACATCGAGGAT 60481 || |||| || | | | || ||||||||| |||| |||||| ||| | | | Sbjct 1233 AGCGCCGAGT--TG-ATGTTGCGCCCGATGGACTCCATATTGTCCTCGAAGCGC-ACCAG 1178 Query 60482 GAAGCATGATACTGGCTTGC----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGAG 60537 |||||| || || ||| || |||| || | |||||||||||||| || || | Sbjct 1177 GAAGCACGAGACGAGCTCGCCGCGCTGCTTCTTG----CCCGCGTTGAGGAACGTGGGGG 1122 Query 60538 TTGCAGGCTGGAAGATTCCCTTGATAATGAGATCCACAAGGGACTCAGC--GTG-CTCGA 60594 | || |||||||| || || | || ||| || ||| |||| Sbjct 1121 TGGCGGGCTGGAAACGACC--GGAGATNNNNNNNNNNGAGCCGCTCGGCCAGTGCCTCGT 1064 Query 60595 AGTCTTCGCTGTAGTGGATGGCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGC 60654 | || | || | | | | ||||| || || ||| | ||||| |||| Sbjct 1063 CCCCGTCCGCGAGGTACAGCGACACCATCACCACGCGGTCCTCGAACCGCTCCAGGTAGC 1004 Query 60655 GCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGG 60714 ||| || ||| ||||||| | |||||| | |||||||| | ||| |||| | ||| Sbjct 1003 GCTGACCGTCGAAGGTCTTCAGCGTGTAGGACGTGTAGAACTTGAACGCCCCCAGGAAGG 944 Query 60715 TCTTGAAGCGGAACTTGTGTCCGTAGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGC 60774 ||| |||||||||||||| ||||| ||||| || || |||| | | |||||||| Sbjct 943 TCTGGAAGCGGAACTTGTAGCCGTACGCCTGCTTGGACAGCTTCTTGACGAACTCGAAGC 884 Query 60775 CGTAGCGAAGGACGACATCCTTGTCC-CATAGT--TGGACTTCCTCTGTGAGGTGATCCA 60831 ||| | | | ||| | || | |||| ||| ||| | |||| | | Sbjct 883 TGTA---CTTGTCCAGCACCTCGGCCTCGTAGTACTGGTGGTCCAC---CAGGTACTTGA 830 Query 60832 CCTTCTCCTCTAGGGAGTGAAAGAATACGGTGTTCTTGTTGACGTGCTCCAGGAAGTA 60889 ||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||||| Sbjct 829 GCTTCTCCTCGAGGTCGTGGAAGAACACGGTGTTCTTGTTGACGTGCTGCAGGAAGTA 772 Score = 136 bits (150), Expect = 2e-27 Identities = 243/353 (69%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 58457 GTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCG 58516 |||||||| | ||| | |||||| ||||||||||| || ||||| ||||| || Sbjct 2719 GTAGTACATGGTCTTGATGCCCTTGCGCCACGCGTAGATCTGGGCGCGGTTGATGTCACG 2660 Query 58517 CGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGA 58576 ||| || || || || |||||||||||| || || | ||||||||| || | | Sbjct 2659 CGTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGAGAGGCCCTGGTCCACGTGCTGGGT 2600 Query 58577 TGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCGCTATCAATT 58634 || | |||||| | || |||||| | ||| ||||| |||| ||| | | Sbjct 2599 GGCCGCGGCGTACGTGTCGATGATCTTCTCGTAG--CCGATCTCGTACGCGTCCTGGAAG 2542 Query 58635 GATTCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCTTACCC 58694 | || | ||||| ||| || | | ||||| ||||| || || ||||| ||| Sbjct 2541 TACTCCAGGTTCTCGTTGTCCATGAAGGGCGCCGGGTAGTAGACGCGGCCCAGCTTTCCC 2482 Query 58695 TCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAATG 58754 |||||||| | ||| | | |||| | ||||| || |||| ||||| | ||| ||| Sbjct 2481 TCCTTGCGGATCTCGATCCGCGAGGCGATCGGGTGGATGGAGGACGTGGAGTTGTTGATG 2422 Query 58755 TACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACC 58807 || ||||| ||||| || || || | ||||| |||||||||||||| || || Sbjct 2421 TAGGAGATGGAGCCCGTGGGCGGCACGGCCTGCAGGTTCTGGTTGTACATCCC 2369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225713204799320