Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq939 138 5e-28 seq747 120 1e-22 >seq939 Length=10641 Score = 138 bits (152), Expect = 5e-28 Identities = 212/300 (71%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 59304 TCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAG--GCCGTCGC 59361 |||| | |||||||| |||||||| || || ||||| | || | || ||||| || Sbjct 9499 TCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCC--GTCCGGAGCCGCCGTGGC 9442 Query 59362 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 59418 |||||||||||| | ||||| | ||| | |||| ||| ||||| ||| || Sbjct 9441 CAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAGAGCAACGAGTGGAAAGA 9382 Query 59419 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59478 | || | ||| | |||||| | | ||||| || || ||||||||||| ||||| Sbjct 9381 CCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCGGCCGAGAACGTGGCGGA 9322 Query 59479 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59538 |||| || ||| ||||| ||||| || ||| ||||||| ||||| | ||| Sbjct 9321 GTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTCAAGGCACGCTCGTACGA 9262 Query 59539 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59598 |||||||||||| || |||||| || |||| |||| || |||||||||||||| || Sbjct 9261 GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTGGACGAGATCGGCCCCTC 9202 >seq747 Length=14078 Score = 120 bits (132), Expect = 1e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7409 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7468 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7469 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7528 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7529 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7588 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7589 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7648 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 7649 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 7708 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 7709 ATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 7768 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 7769 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 7828 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 7829 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 7885 Query 66450 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 7886 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 7942 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7943 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242454507429176