Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq4991 870 0.0 >seq4991 Length=1104 Score = 870 bits (964), Expect = 0.0 Identities = 761/942 (81%), Gaps = 6/942 (1%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 |||||||||||||||||||| |||||||||||| | ||||| ||| |||| |||||| Sbjct 128 GCCATCAACTGGAACCGCGTCCAGGACGAGAAGGACACCGAGGTCTGGGACCGTCTGACC 187 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054 ||||||||||||||| |||||| | ||| ||||||| ||||| ||||| ||| | Sbjct 188 TCCAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACGTGCAGTCCTGGAAGACC 247 Query 156055 CTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGAC 156114 || |||| || |||| |||||||| ||| ||||| |||||||| |||||||| Sbjct 248 CTCACCGCCGAGGAGCAGGACCTCACCATGAAGGTCTTCACGGGCCTGACCCTGCTGGAC 307 Query 156115 ACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAG 156174 |||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||| Sbjct 308 ACCATCCAGGGCACGGTGGGCGCGGTCTCGCTCATCCCGGACGCCAAGACCCTGCACGAG 367 Query 156175 GAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAAC 156234 ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct 368 GAGGCGGTGTACACCAACATCGCCTTCATGGAGTCCGTGCACGCCAAGTCCTACTCCTCG 427 Query 156235 ATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAG 156294 |||||||| ||||||| ||||| ||| ||||||||| |||||||||||||| ||||| Sbjct 428 ATCTTCTCCACGCTGTCCTCCATGAAGCAGATCGACGAGGCGTTCCGCTGGTCCAAGGAG 487 Query 156295 AACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACCCG 156354 |||| |||||||| ||||| || ||||| || |||||||||| |||||||||||| Sbjct 488 AACGAGCACCTGCAGCGCAAGGCGGACATCGTCCTGCGCTACTACAAGGGTGACGACCCG 547 Query 156355 CTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTAC 156414 || ||| ||||| |||||||||||||||||| ||||||||||||| || |||||| Sbjct 548 CTGAAGAAGAAGGTGGCCTCCACGCTGCTGGAGTCCTTCCTGTTCTACTCGGGGTTCTAC 607 Query 156415 CTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTC 156474 ||||| |||| || || |||| | |||||| ||||||||||| ||| |||||||||| Sbjct 608 CTGCCCATGTACTTCTCCTCGCACGCCAAGCTGACCAACACCGCGGACCTGATCCGGCTG 667 Query 156475 ATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTG 156534 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 668 ATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTACCAGAAGGGTCTG 727 Query 156535 GAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTC 156594 | |||||||| | ||||||||||| || |||||||||||||| || |||||| | Sbjct 728 CTGCAGGAGACCCCCGAGCGCCAGCAGGAGCTGAAGGACTACACCTACGACCTGCTGGAC 787 Query 156595 GAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACC 156654 ||||| | |||||||||| || ||| || ||| |||||||||| || ||| |||| Sbjct 788 GAGCTCTACGACAACGAGGTGGCCTACGCCGAGGCCCTCTACGACTCCGTGGGCTGGACC 847 Query 156655 GAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTAC 156714 |||||||| |||||||| |||| ||||||| |||||||||||| | |||||||||||| Sbjct 848 GAGGACGTCAAGAAGTTTCTGCACTACAACGCGAACAAGGCCCTGAACAACCTGGGCTAC 907 Query 156715 GACGCGCTGTTCAGCCGCAGCGA-CTG--CGACGTCAACCCGGCCATCCTGAGCGCGCTG 156771 || ||||||||| |||| |||| || |||||| |||||| ||||| | ||||| Sbjct 908 GAGGCGCTGTTC--CCGC-GCGAGATGACGGACGTCTCCCCGGCGATCCTCTCCTCGCTG 964 Query 156772 TCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATG 156831 || || | ||||||||||||||||||||||| || || ||| | | ||||| || Sbjct 965 TCCCCGAACGCGGACGAGAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCTACGTGATC 1024 Query 156832 GCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 | ||||| ||| ||| || ||||| ||||||||||||||| Sbjct 1025 GGCAAGGCCGTGAACACGGAGGACGAGGACTGGGACTTCTGA 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526562999422560