Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq557 104 2e-17 seq205 100 2e-16 >seq557 Length=19854 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||||| || Sbjct 7502 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGACCGC 7561 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| || | | || |||| ||| ||||| |||| |||||| || | | Sbjct 7562 CGACCCGCACAACTCCGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 7621 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 7622 GAAGGACCCCAAGGTGGTCAAGGCCGG 7648 >seq205 Length=38413 Score = 100 bits (110), Expect = 2e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | |||||| Sbjct 19015 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGCTACAA 18956 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 18955 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGTAC 18896 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| | ||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 18895 CATCTTCGATTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGA 18836 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 18835 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 18776 Query 108576 GGACCCCGACGTGATCTCGGCCGGT 108600 | || ||||| | |||||||| Sbjct 18775 GCACAAGAACGTGCGCGCGGCCGGT 18751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747776940432