Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq50 154 1e-32 seq137 131 2e-25 seq181 113 4e-20 seq1080 98.7 9e-16 seq3929 96.9 3e-15 >seq50 Length=70362 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 19852 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19911 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 19912 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19971 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 19972 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 20030 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 20031 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20079 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||||| || | |||||||| || || || ||||| |||| Sbjct 19623 TCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 19682 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 19683 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19742 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| | Sbjct 19743 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCA 19801 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || ||||| |||| || || || || ||||||||| Sbjct 19802 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19851 >seq137 Length=47801 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||| || || || || ||||| |||| || |||||| Sbjct 15603 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15662 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15663 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15722 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 15723 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 15781 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| |||| ||| || || || |||||||| Sbjct 15782 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15817 >seq181 Length=41757 Score = 113 bits (124), Expect = 4e-20 Identities = 336/511 (66%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | || ||| | ||| Sbjct 22596 CGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCG 22542 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 22541 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 22482 Query 145820 --TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAA 145877 || | | | ||| || ||||| | | || || || |||||||| |||| | Sbjct 22481 CTTG--CTAAT-CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA 22425 Query 145878 AGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTT 145936 || ||| ||||| || | || ||| | || | ||| || || ||||| | || | Sbjct 22424 -GGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCT 22366 Query 145937 TAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | | |||||||| || | || || | | |||||||| || ||| || | Sbjct 22365 TGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAG 22306 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | |||||||| || || || | ||| || || | || |||| |||| Sbjct 22305 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 22246 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||| || || || ||||| | |||| ||| | Sbjct 22245 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 22186 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 || ||||||||| ||||||||||| || | ||||| ||||||| || || ||||| Sbjct 22185 TGTACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 22126 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| || | ||||| | | |||||| Sbjct 22125 GAGCCACGAGGAGCGAGTTGCGGATGCCGTG 22095 >seq1080 Length=8813 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 3593 ATCTGCATG 3585 >seq3929 Length=1496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 1089 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 1147 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 1148 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1206 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1207 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468834458720