Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1080 161 1e-34 seq50 159 4e-34 seq137 145 9e-30 seq42 107 2e-18 >seq1080 Length=8813 Score = 161 bits (178), Expect = 1e-34 Identities = 152/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || ||||||||| ||| |||| ||||| | | | Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 3657 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || || || |||| ||||||||| ||||||||||| || || ||| Sbjct 3656 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 3597 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 3596 AAGATCTGCAT 3586 >seq50 Length=70362 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| |||| |||||| ||||| ||||||||| || ||||| | Sbjct 19635 ACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 19694 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||||| ||| | || |||||| Sbjct 19695 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 19754 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||| |||| ||| | ||| | | | | ||| | ||||| |||| ||||| Sbjct 19755 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 19813 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||| ||| || || ||||| ||||| Sbjct 19814 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19850 Score = 156 bits (172), Expect = 5e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| ||| |||||| ||||| ||||||||| Sbjct 19850 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 19909 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||||||||| |||| ||||||||||||| || Sbjct 19910 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 19969 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||| |||| ||| | ||| | | | | ||| | ||| Sbjct 19970 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCC 20028 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| ||||||||| |||||||||| ||| || || ||||| ||||| || Sbjct 20029 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 20081 >seq137 Length=47801 Score = 145 bits (160), Expect = 9e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| ||| ||||| ||||| ||||||||| Sbjct 15589 TGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGC 15648 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| |||||||||||| | || Sbjct 15649 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 15708 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| || |||| ||| | ||| | | | || ||| || ||| Sbjct 15709 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 15767 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| ||||| || |||||||||| || || || ||||| ||||| ||| Sbjct 15768 ACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 15821 >seq42 Length=75639 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| || || |||||||| || |||||||| | Sbjct 36055 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCC 36114 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| ||||||||||| Sbjct 36115 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 36156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200401848560