Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq939 122 2e-23 >seq939 Length=10641 Score = 122 bits (134), Expect = 2e-23 Identities = 237/347 (68%), Gaps = 5/347 (1%) Strand=Plus/Minus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 ||||| || |||||| ||||| || | || || | || ||||||||||| | Sbjct 9527 ATGGCTGGCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGC 9468 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 ||||| || |||| |||||||| || |||||| | || || ||||| ||| | ||| Sbjct 9467 TTCACGCCGTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTC 9408 Query 30289 GACCG-CACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATG 30347 ||||| || || ||||| ||| |||| || || || ||| || | ||| || || Sbjct 9407 GACCGGCAGAGC-AACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTG 9349 Query 30348 GCGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGT 30407 ||| || |||||||||||| || | ||| || | ||| ||||||||||||| Sbjct 9348 GCGTGAGGCGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCA 9289 Query 30408 CGGCACCCTCGCCCAGCGCACGTACGAG---AAGGACGGCGAGCGCCGAGCGTCCTACGA 30464 ||| |||| ||| |||||||| ||||| || |||||||| | | ||| Sbjct 9288 GGGCCGCCTCAAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGA 9229 Query 30465 GGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCA 30511 | | | | || || |||||||| | | ||| |||||||||||| Sbjct 9228 GCTGGAAGTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGCCA 9182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120229121227064