Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq50 105 5e-18 seq422 102 6e-17 seq137 98.7 8e-16 seq42 86.0 5e-12 >seq50 Length=70362 Score = 105 bits (116), Expect = 5e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590 |||| || ||||| | || |||| |||||| || || || ||| || || || ||| Sbjct 19615 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTG 19674 Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 || || || | ||| |||| |||| |||||| ||||| || ||||| ||||| || Sbjct 19675 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 19734 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 || | || | |||||||||||| || || || || || | | || || || Sbjct 19735 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 19794 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| |||| ||| || || || |||||||| || || || || |||||||| Sbjct 19795 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19850 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| || || | ||| Sbjct 19861 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 19920 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 19921 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 19980 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || || | | || || || | |||||| |||| ||| Sbjct 19981 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 20040 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || || || |||||||| Sbjct 20041 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20078 >seq422 Length=24822 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 |||||| | | | ||| ||||||| | ||| |||||||| || | ||| || | ||| Sbjct 7828 AAGTCTTCGGCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCG 7887 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 |||||||| || || ||||||||| | ||| | || || ||||| || ||||| | Sbjct 7888 ATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCGGCGCCACA 7947 Query 9244 CGACCGTAGCATCCCACCGGTAATTG-CACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || |||| ||| ||| ||| || | |||| || ||| ||| |||| || |||||||| Sbjct 7948 CGCGCGTAACAT-CCAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCC 8006 Query 9303 GTGTTTTGGAATCACGGTGTCGTAGCCG 9330 | |||||||| | ||||||| || Sbjct 8007 GCCCGCGGGAATCACAGCGTCGTAGGCG 8034 >seq137 Length=47801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || ||||| || || || || ||||| || Sbjct 15590 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCT 15649 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 15650 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15709 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||| || || || || | | || || |||| |||||| Sbjct 15710 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15769 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| || ||||| || ||||||||||| || || || ||||||||| || Sbjct 15770 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 15821 >seq42 Length=75639 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||||||||| || ||||| ||||| || || ||| | || Sbjct 36053 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGG 36112 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 36113 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 36162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912631683094