Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq181 345 8e-90 seq3929 255 1e-62 >seq181 Length=41757 Score = 345 bits (382), Expect = 8e-90 Identities = 1036/1577 (66%), Gaps = 64/1577 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | ||||| | | | ||| | ||| || ||||| || Sbjct 22238 GTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGG 22179 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| ||||||||| |||| |||||| || || || |||||||| |||||||| Sbjct 22178 CTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCAC 22119 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCGA-AGCTCTGCCCAGTC 213085 ||||| ||| | | ||||||| | || | | | || ||| | ||||| || Sbjct 22118 GAGGAGCGAGTTGCGGATGCCGTGCTTG---ATCACGTTCTCCTTGAGCGCAGCCCAATC 22062 Query 213086 CCATCTGCC---AGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 ||| ||| |||| || | ||| ||||||||| ||||| ||||| || Sbjct 22061 CCACAAGCCCGAAGACGGGG---------TGACGCCCCACATGTCGAACTGGAAGATACC 22011 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 ||||| | || |||||| | | ||| ||||| |||||||||| | ||| Sbjct 22010 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCAT 21951 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || | || || | |||||||||||| || || || || | | ||||||| | ||| Sbjct 21950 CGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGC 21891 Query 213263 CTCTGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | ||| | ||| | ||| | |||| | || |||| || || |||||||| | Sbjct 21890 TTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGC 21832 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 | || || | || | ||| | || ||| |||||| | || |||||||| |||||| || Sbjct 21831 CAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCCTCCACGGGGTAGTAG 21773 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| ||| |||| |||||| | ||| ||||| |||| ||||| || | | ||| | | Sbjct 21772 TTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTC 21713 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | || |||||||| || |||| |||||||| || ||||| | |||||| Sbjct 21712 TGGTAGTTGAACACT------CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGG 21659 Query 213501 TTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 ||||| || |||||||| | | | | | ||||||||||| |||||| ||||| |||||| Sbjct 21658 TTGCACACCGCCACCTCATCGGGCGAC-GTGTACTCCATAATCTCGCAGCACAAGTTGCT 21600 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 | ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||| || Sbjct 21599 CGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAG 21540 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||| | || || ||||| | ||| | |||| || | ||| || | | ||| Sbjct 21539 CATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGC 21480 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 |||| | | | | || || | | |||||||| ||||| || | ||| Sbjct 21479 ATTGATCGTCTTGC-GCGCGCGCCCCTCCT--TCTCGTACTTCTCGTACAGAGTCTCGAA 21423 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCC-CGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 |||| ||||||| | || ||||| || | || ||| || | |||||||| | Sbjct 21422 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCAT-TGGGGCAGAAAAGGCTCCACT 21364 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||| || || | || ||||||||| || ||||||||||| ||| ||| |||| Sbjct 21363 TGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGT 21304 Query 213859 CCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 | | | | | ||||| || ||| |||||||| || || || || || | Sbjct 21303 CGCGCGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACA 21247 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCT 213972 ||| |||||||||||||||| ||||||||| || | ||| | |||| || |||| Sbjct 21246 CGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCT 21187 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 ||||||| | |||| ||||||| | ||| | ||| | | ||||||||| Sbjct 21186 GGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATG 21127 Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTA 214092 |||||| || || || || | | ||| | | |||| ||| | || | Sbjct 21126 ATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAA 21067 Query 214093 TGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCA 214152 | || ||||| |||||||||| ||||| || | | || || ||||| | | Sbjct 21066 TACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAA 21007 Query 214153 TGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAG 214212 | ||| || | | ||||| ||| || ||| ||||| || | | || ||| | Sbjct 21006 TCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGG 20947 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCT 214272 ||| || |||||||| | || || | | ||| | | || | |||| || || | Sbjct 20946 CGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGTGT 20887 Query 214273 CCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGC 214331 ||| | | ||||||| |||||||| || || || ||| | ||| | ||| ||| Sbjct 20886 GCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGCATGATCATCTGC 20828 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGA 214385 ||||| | ||| | | ||||| || || || |||||| ||||| || Sbjct 20827 TGGGGGCGCTCCA--CGACCTTT----CCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGC 20774 Query 214386 GTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTGTATGAGGGCAGCGTCC 214442 |||||||| || |||||| ||| | | || || |||| |||| ||| | || Sbjct 20773 GTCTTGAAGCCGAAGTAGTCGTA---CTCAAAGTCCCGGTCGTGGATGATGGCCGAGTTA 20717 Query 214443 AGCTCTTCCGCGTGCTC 214459 ||||| ||| |||||| Sbjct 20716 AGCTCGTCCTTGTGCTC 20700 >seq3929 Length=1496 Score = 255 bits (282), Expect = 1e-62 Identities = 562/838 (67%), Gaps = 11/838 (1%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 1256 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCAT 1197 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | |||| | ||||||| | Sbjct 1196 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCG 1137 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 1136 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCAC 1077 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | | | | | ||||| | ||| ||| ||| || || | ||| ||| | Sbjct 1076 GGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTG 1017 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || ||| | || | | ||| || ||||| Sbjct 1016 CACGCGGCTCTCCGGCAGCTTGTTCACCAA---CTTCGAGTACATGAGGCACGCGAAGTC 960 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 959 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 900 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| || || |||||||| ||||||||||| Sbjct 899 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 840 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | | | | | ||| | Sbjct 839 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA-CCACTTGA 781 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCT 48377 |||||||| |||||||||| | ||| || |||||||| ||||| | | ||| | | Sbjct 780 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGAT 721 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 ||| ||| | |||||| | || || || |||| | ||||| ||| |||| Sbjct 720 CCTT---CTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGT 664 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | ||||| ||| ||||| | Sbjct 663 GGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCT 604 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || | ||| ||||| || || || || || ||||| ||||| | Sbjct 603 CATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATG 544 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| ||||||||||||| || || |||| ||| | || Sbjct 543 CTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCTTCAGGT 484 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | | ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 483 CGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931470177707520