Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq4782 86.0 1e-11 >seq4782 Length=1171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 123076 CTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCCTC 123135 ||| ||||| || |||||| || ||| ||||||| ||||| ||||| ||||| ||||| Sbjct 144 CTGCCAGCTCTACCAGCGCTCGGCGGACCTGTTCCTGGGCGTGCCGTTCAACATCGCCTC 85 Query 123136 TTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTTCGT 123195 |||||||| || | ||||| ||||||||| | | ||| || || ||||| Sbjct 84 CTACGCGCTGCTCACCGTGATGTTGGCCCAGCAGTGCGACCTGGTGCCCGGCGAGTTCGT 25 Query 123196 GTGGACGGGTGGGGA 123210 |||||| || ||||| Sbjct 24 GTGGACCGGCGGGGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777579723688800