Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq636 311 1e-79 seq137 134 2e-26 seq134 122 1e-22 seq1080 118 1e-21 seq50 116 5e-21 seq179 102 1e-16 >seq636 Length=16987 Score = 311 bits (344), Expect = 1e-79 Identities = 1030/1584 (65%), Gaps = 26/1584 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || || || ||| Sbjct 5684 GGCATCGACCTGGGCACGACCTACTCGTGCGTGGGCGTGTGGCAGAACGACCGCGTGGAG 5625 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 5624 ATCATCGCCAACGACCAGGGCAACCGCACGACACCGTCCTACGTGGCCTTCACGGACACG 5565 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || || | || || || || || || ||| || |||||| | ||| || || Sbjct 5564 GAGCGCCTTATCGGCGACGCGGCCAAGAACCAGGTGGCCATGAACGCGCACAACACGGTG 5505 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| | |||||| | || || |||||||| | || |||| || || || Sbjct 5504 TTTGATGTCAAGCGTTTGATCGGGCGCAAGTTCACCGACCCTGAAGTGCAGTCGGACATC 5445 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 | | ||||| | | | |||| | || ||| || ||||||| | | || || | Sbjct 5444 AGGCACTGGCCGTTTAAAGTGGCTCGAGGTCCGGAGAATAAGCCGGA-AGTGGTGGTGCA 5386 Query 195605 TTTCAC-GGTGAGAAGAAACAATTTGCT-CCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 |||| |||||| || | ||| | ||||| || || ||||| |||||| || | | Sbjct 5385 GTTCAAAGGTGAGCAGGTG-ACTTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGGTCA 5327 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| |||| ||||| ||| ||| ||||| ||||| | ||||| ||||| | Sbjct 5326 AGATGCGCGAGATCGCGGAGGCTTACATTGGTAAGCAGGTGAAGAACGCAGTGGTGACGG 5267 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||||||||||| || || || | || ||||| | Sbjct 5266 TGCCGGCCTACTTCAACGACTCGCAGCGACAGGCGACCAAAGATGCCGGTGTCATTGCTG 5207 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 || | ||| || | || ||||| || || ||||| || || ||||| || ||||||| Sbjct 5206 GTTTGAACGTGCTGCGTATCATCAACGAGCCGACAGCCGCCGCTATTGCCTACGGTCTGG 5147 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||| |||| | ||| | || || ||||||| || || || || || || || | Sbjct 5146 ACAAG---AAGGGTGGAGAGCACAACGTGCTGATCTTCGACCTGGGCGGCGGCACCTTCG 5090 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 |||| || ||||| | |||||||| || || ||||| || ||||| || || || || | Sbjct 5089 ATGTGTCGCTTCTAACTATTGAAGACGGCATCTTCGAGGTGAAGGCGACGGCAGGCGACA 5030 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGTCTGATGAGTTC 196021 | || || || || ||||| ||||| || || || || ||||| | || ||| Sbjct 5029 CGCACCTGGGCGGCGAAGACTTCGACAACCGCCTCGTCGAGTTCTTTGT-GCAAGAATTC 4971 Query 196022 CGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACT 196081 || ||| || || ||||| | | || | | || || || || || | || Sbjct 4970 AAGCGCAAGCATCGCAAGGATATGACGGTGAACTCGCGCGCGCTGCGGCGTCTGCGTACG 4911 Query 196082 GCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGAT 196141 || || || |||||||| || || || || | || ||| | | |||||||| Sbjct 4910 GCGTGCGAGCGTGCCAAGCGTACACTGTCGATGTCTGCGCAAGCGTACATCGAGATTGAC 4851 Query 196142 TCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTA 196201 ||| || | || || | || ||| | | || ||||| || || || || || || | Sbjct 4850 TCGCTGCTGGATGGTGTCGATTTCAACTCTACCATTACGCGCGCGCGGTTCGAGGATCTT 4791 Query 196202 AACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAG 196261 ||| || ||| | ||| ||||| || || | || || || || ||| | ||| Sbjct 4790 TGTGGTGAATTCTTTCGCAAGACAATGGACCCAGTGGCGCAGGTTCTACGAGACTCGAAG 4731 Query 196262 ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321 || ||| |||| | || | || || ||||| || || || ||||| |||||| Sbjct 4730 CTGTCGAAGAGCCAGGTGAACGAGGTGGTGCTAGTGGGCGGCTCGACTCGTATCCCGAAG 4671 Query 196322 ATTCAACAGATGCT-TTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCC 196380 | || ||| || | || | ||| ||||| ||| | | ||| | |||||||| Sbjct 4670 GTGCAGCAGTTGTTGATCGA-CTTTTTCAACGGTAAGAAGCTCTTCAAGTCCATCAACCC 4612 Query 196381 GGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA 196440 ||| ||||| | || || ||||| | || ||||| || || || || |||| Sbjct 4611 GGACGAAGCCATAGCGTACGGTGCTACAGTGCAGGCGGCCATCCTGAGCGGCCATGAC-- 4554 Query 196441 TAATAACGTCCAA-------GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | ||||||| || || |||||||| || || || || | || || || Sbjct 4553 TCGT--CGTCCAAGTTGCAGGACCTGCTGCTACTGGACGTGGCGCCGCTGTCTCTTGGCT 4496 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | || || || || || || ||||| | | || | ||||| || |||| | | Sbjct 4495 TGGAGACGGCTGGCGGAGTCATGACGACGCTGATCCCGCGCAACACCACGGTTCCAGCCA 4436 Query 196554 AGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 |||||| | |||| || || ||||| | || || || | ||||| || ||||| Sbjct 4435 AGAAGGCGC-AGTCGTTCTCGACGTACGCGGACAACCAGTCCGGTGTCTTGATCCAAGTG 4377 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGAC 196671 | || || || || || | ||||| ||||| || || || ||| || ||| Sbjct 4376 TTCGAGGGTGAGCGTTCGATGACCTGTGATAATCATCTTCTGGGCAAGTTTAACTTGGAC 4317 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || | ||||| || || ||| | || ||||| | || | Sbjct 4316 -GGCATCCCGCCCATGCCTCGCGGTGTCCCGCAAATTGACGTGACGTTCGACGTGGATGT 4258 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||| | || | ||| ||| | | ||||| | ||||| | Sbjct 4257 CAACGGCATTTTGAACGTGTCGGCCGTGGAGAAGTCGACGGGCAAGGAGAACAAGATCAT 4198 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || || || |||||||| ||| | ||| || || || || || |||||| | || || Sbjct 4197 CATCACGAACGACAAGGGCCGGTTATCTCAGTCCGAGATCGACCGCATGGTTGATGACGC 4138 Query 196852 GGAAAAGTACAGGGAAGAAGACGA 196875 || ||||||| ||| |||| || Sbjct 4137 TGAGAAGTACAAGGACCAAGATGA 4114 >seq137 Length=47801 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || |||||| | || || ||| |||| Sbjct 15817 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15758 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || ||||| || ||||||||||| || || || ||| Sbjct 15757 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 15698 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || ||||||||||| || || || || || |||||| Sbjct 15697 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 15638 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| ||||| || ||||| || || Sbjct 15637 ATCCAGAAGGAATCTACGCTGCACCTGGTGCT 15606 >seq134 Length=48213 Score = 122 bits (134), Expect = 1e-22 Identities = 208/298 (70%), Gaps = 13/298 (4%) Strand=Plus/Minus Query 198660 TTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCA 198719 |||||||| |||||||||||||| ||| | ||| || || || || || || | || Sbjct 4535 TTCATCGAAATGTTCGTTGGTGTGGGTCCCTCGCGTGTACGTGACCTGTTCAAGGAGGCT 4476 Query 198720 CGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTG-----GTAAGA 198774 || | || ||||| || | ||||| ||||| ||||| ||||| | | | || Sbjct 4475 CGCGCGAACGCTCCATGCATTGTGTTCATCGATGAAATTGATGCTGTGGCCCGTGCACGA 4416 Query 198775 AGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTC 198834 ||| || | |||| || | | || ||||| |||||||| | ||| | |||||||| | Sbjct 4415 AGCAAGG-GCAACTTCTCCGGC-GGCAATGACGAGCGTGAAAACACGCTCAACCAGCTGC 4358 Query 198835 TCACTGAGATGGATGGTTTTGAC---AATGAGACTGGTATCGTGGTGATTGCTGCTACAA 198891 | |||||||||||||| || | |||| ||| | |||||| |||||| ||| | Sbjct 4357 TGGTGGAGATGGATGGTTTCAACTCGAGTGAG---GGTGTGGTGGTGCTTGCTGGTACGA 4301 Query 198892 ATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACCGTAAGAT 198949 | | ||||| || || | || | || |||||||||||||||||||| |||| Sbjct 4300 ACCGCGCCGATATTCTTGACAAGGCCATCCTGCGTCCCGGTCGATTCGACCGGCAGAT 4243 >seq1080 Length=8813 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || ||||| || || || ||| |||| Sbjct 3586 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 3645 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||| || || || |||| || || || || |||||||||||||| || || ||| Sbjct 3646 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 3705 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || ||| | || |||||| Sbjct 3706 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 3765 Query 172042 GTTCAAAAGG 172051 | || |||| Sbjct 3766 ATCCAGAAGG 3775 >seq50 Length=70362 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| || || || ||| | || Sbjct 19850 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19791 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||| ||||| || ||||| ||| Sbjct 19790 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 19731 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 19730 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19671 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||| | || || | ||||| || || Sbjct 19670 ATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGG 19624 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| || || || ||| | || Sbjct 20078 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 20019 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||| ||||| || ||||| ||| Sbjct 20018 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 19959 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 19958 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19899 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||| | || || | || || ||||| Sbjct 19898 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 19852 >seq179 Length=42063 Score = 102 bits (112), Expect = 1e-16 Identities = 384/594 (65%), Gaps = 20/594 (3%) Strand=Plus/Plus Query 196268 AAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAA 196327 ||||| |||| || || ||||| || ||||| || || |||||||| || ||| | || Sbjct 26425 AAGTCGGAGGTGGACGAGATTGTGCTGGTGGGCGGTTCGACCCGTATCCCCAAGGTGCAG 26484 Query 196328 CAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGA----TCAACCCG 196381 ||| || | | || || |||||| ||||| | || | ||||| Sbjct 26485 CAGCTGAT--CAAGGACTACTTCAACGGCAAAGAGC----CCTCGCGCGGTGTGAACCCC 26538 Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT 196441 || || || ||||| || ||||| || || |||| | ||| || |||| || | Sbjct 26539 GACGAGGCTGTTGCCTACGGTGCTGCTGTGCAGGGCGGTATCCTG---GGTGGCGAGCAG 26595 Query 196442 AATAACGT--CCAAGATCTT-CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAA 196498 | || | ||||| | | || || | ||||| | || | |||| |||| |||| Sbjct 26596 GACGACCTGACCAAGGACGTGCTTCTGATCGATGTGGTGCCTCTGTCCCAGGGTATTGAG 26655 Query 196499 ACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAG 196558 || | |||||| || ||||| || | ||| | | ||||| || ||||| |||||| Sbjct 26656 ACTGTGGGTGGCGTCATGACCAAGCTCATTAACCGCAACACTGTGATCCCGACCAAGAAG 26715 Query 196559 GAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAA 196618 || ||| || || || || || || || | ||| | ||| || || | || Sbjct 26716 TCGCAGACCTTCTCGACCTACCAGGACAACCAGCCCGCTGTGCTTATCCAGGTGTTCGAG 26775 Query 196619 GGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGAT 196677 || || || | || || | ||||| |||| ||| || || | ||||| | || || | Sbjct 26776 GGCGAGCG-TGCCATGACCAAGGACAACCGTCTTCTGGGCAAGTTCGAGCTCACTGGCCT 26834 Query 196678 TCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGG 196737 || | || || | ||||| || |||||| | || ||||| || ||||| || || Sbjct 26835 GCCGCCCGCCCCGCGTGGTGTGCCCCAGATTGAGGTGACGTTCGAGATTGACGCCAACGG 26894 Query 196738 AATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTAC 196797 || || | || | ||||||||||||| | ||||| | || | ||| ||| || Sbjct 26895 TATCCTGCAGGTGTCCGCTGAGGACAAGGGCACGGGCAAGGCCGAGACGATCACGATCAC 26954 Query 196798 CAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || ||||| || || || ||||||| || || || ||||| || || || Sbjct 26955 TGCCGAGAAGGGCCGTCTGTCGCAGGAGGAGATCGACCGCATGGTCCAGGAGGC 27008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657818175200160