Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq2959 729 0.0 seq5028 315 2e-81 >seq2959 Length=2134 Score = 729 bits (808), Expect = 0.0 Identities = 1376/1989 (69%), Gaps = 70/1989 (4%) Strand=Plus/Plus Query 39635 CACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTC 39694 ||||||||||||||| | ||| || | |||| | | ||||||||||| || | ||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 39695 GGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTT 39754 || | |||||||||||| || |||||| ||||| |||||||| || || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 39755 CGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTC 39814 ||||| || | ||||||| |||||||| ||||| || |||| | || |||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 39815 CTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTG 39874 ||||||||||||||| || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 39875 GAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGG 39934 ||| || || ||||| || | ||||||||||||||| | |||||||||| | ||| Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 39935 GATGTTCTCCAGGTCGA---CGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTC 39991 | || ||||||||| | || | | ||||| || ||||||||| | |||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTTCAGCGTGATGTTCTCCAGCGCGTC 378 Query 39992 GCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTC 40051 | |||||||||||||| || ||||| |||||||||||||| | ||| ||||| |||| Sbjct 379 GGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCTC 438 Query 40052 GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACC-CAC-ACC 40109 ||| | |||||||||||||| |||||| | ||||||||| |||| | || | | Sbjct 439 GCACGTGGGGTAGTCGAACTGGGTGATCACCTGACCGTCCTGC--TCGCGGCGCATGAGC 496 Query 40110 GGGATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATC 40169 |||||| ||||| ||| || || |||||||||||| || || |||||||||||| | Sbjct 497 GGGATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCAC 556 Query 40170 TGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCG 40229 || || ||| || || || || | || || |||| ||||| | ||| || |||||| Sbjct 557 TGGCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTCG 616 Query 40230 GAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGA---GGGTGCTCGGCGTTG 40286 || | | || | ||| ||||||| ||||| || | || || | ||| | Sbjct 617 TCCTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTAG 676 Query 40287 AAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGC 40346 | | ||| | |||| || |||||||| ||||| | ||| |||||||| ||| Sbjct 677 ACG-TCCTGC--AGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGC 733 Query 40347 TTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGC 40406 ||| || | ||| || | | | |||||||| | | |||||| | ||| | Sbjct 734 CGCTCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTG 793 Query 40407 GCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG 40466 |||||||| |||||||| ||||| || || ||| | ||||||||| ||| Sbjct 794 GCCTTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTG 853 Query 40467 ACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40526 ||||| |||||||||||| || || ||||| |||||||| | ||||| ||||||||| Sbjct 854 ACGTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATG 913 Query 40527 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGG 40586 |||||||| || ||||| ||||| ||||||||||| || |||||| | ||||||| || Sbjct 914 GACACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGC 973 Query 40587 TCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCG 40646 |||||||| | | | |||| || |||| |||||||| | || || || || || || Sbjct 974 TCGGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCC 1033 Query 40647 ACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40706 || | || |||||| ||||| | |||| ||||||||||||||| || |||||||| Sbjct 1034 ACGCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCG 1093 Query 40707 GGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAG 40766 |||||||||||||||||||| || | ||||||||| | ||||| | | ||| | Sbjct 1094 GGGAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCT---CACGGACGTCG 1150 Query 40767 TCCG---TGCCGTTCGGGTACCGACGACGC-GCGCCTCGGGCGACCTCGTCCTCGAACCA 40822 |||| | ||| |||| | || || || ||| ||||||| | |||||| Sbjct 1151 TCCGGGATCCCGCCCGGGAAGCGGTAGTGCAGCCCCT-TCTCGACCTCCTTGATGAACCA 1209 Query 40823 GGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTC----GTGCT 40878 | | |||| | |||||||||| ||||| |||||| ||| | ||| | Sbjct 1210 CGAGGTCTCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGTTGGCGGAGGTG-T 1268 Query 40879 CGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCATCCCCC-- 40935 ||||| | | | | || ||||||||| ||||| ||| | |||| || | Sbjct 1269 CGAAC-TCCACCTCGCAGCG-----CTCGGCGATCTCCAGGGTGTTGTCGCACGCCTCGG 1322 Query 40936 ---ACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGT 40992 | |||| || | || ||| || ||||| ||| ||||| |||||| Sbjct 1323 GGAAGTCCC----GGAACAG--CTCG-----CG-CATCTGCTCGGGGGACTTGAGGTAGA 1370 Query 40993 ACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGC 41052 || || | ||||| |||||| | |||| | ||||||| ||||| ||| |||| Sbjct 1371 ACTCGTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTGCAGCGTGGAGCCGGACTGCACGC 1430 Query 41053 ACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGA 41112 ||||||| || |||| | | ||||||||| | |||||| ||||| ||| Sbjct 1431 ACAGCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGG 1490 Query 41113 CCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCT 41172 |||| | | || |||| ||| | || || ||| |||| | || || || Sbjct 1491 CCACGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCT 1550 Query 41173 CGATCTCGATGCCGTGGTCCATGAGTTCG-AGCAGGTAGCGCTCGCGACCC-AGGATCTC 41230 |||| | | ||||||||||| |||||| || | | || ||| || ||| | ||| || Sbjct 1551 CGATGCCCAGCCCGTGGTCCATCAGTTCGCAGTA-GAAGTTCTC-CGCCCCGAAGATGTC 1608 Query 41231 CAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGGTTCAGCCTGGTCAT 41290 | | | || | |||||| |||| |||||||||||||| ||||| ||||| |||| Sbjct 1609 CCGGAACTCCGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTG 1668 Query 41291 GACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGACGAG 41350 || ||||| ||||| |||||||| |||||| |||| || | ||| | | || Sbjct 1669 CACCTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGCAG 1728 Query 41351 TTCCTTGTCGAGGCGGGCGTACTTGCCCATCAGCCCCTCCTGGTAGGAGCGAGACGTGAT 41410 ||| ||| | ||||| |||| || | | |||||| || | | | | | || Sbjct 1729 CTCCCGGTCCATGCGGG---GCTTGTACAGCTGGCCCTCCAGGGACG-CCTTGGTG-GAC 1783 Query 41411 GCGC--ATGAGGTTGTGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTAC 41468 |||| | ||||| || | |||| || |||||| |||| ||||||||||||||| Sbjct 1784 GCGCGGAACAGGTTCTGCATGCCCTCGCTGGACTGCGCCAGCAGGGTCATGTGCGTGTAG 1843 Query 41469 GCACCGTTACCCGACACGTCGTAACGCTTCTGC--TCGGGCGACCCCCAC-TTGACCCGG 41525 || ||| ||| || ||||||| ||| | || || |||| | ||| | ||| Sbjct 1844 GCGCCGGCACCGGATACGTCGT--CGCGGCCGCCGTC-CGCGAACTTCACGCGGGTGCGG 1900 Query 41526 TCAAGGCTTCGCCTGTCGCCGGGGGCGACGTAGGCTTCCATTCCCACGATGGGCTTGATG 41585 || ||| | | || ||| || | || |||||| |||| || | ||| ||||||||| Sbjct 1901 TCCTGGC--GGGCGGT-GCCCGGCGTGAGGTAGGCCTCCACGCCGATGATCGGCTTGATG 1957 Query 41586 CCCGCTGCG 41594 || || ||| Sbjct 1958 CCGGCCGCG 1966 >seq5028 Length=1094 Score = 315 bits (348), Expect = 2e-81 Identities = 424/582 (73%), Gaps = 15/582 (3%) Strand=Plus/Minus Query 39038 GTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCTCGCTTGCT---CACGGTCGCCTG 39094 |||||||||||||||||||| || ||||||||||| |||||| | ||| |||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 39095 AGTCGCTGCCTTCAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGGAGTTC 39154 | | ||| |||||||| | ||| |||||||||||| | | ||| || Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 39155 GGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGAT 39214 | || || ||||| | |||||||||| ||| ||| || ||||||||||| Sbjct 464 CACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGAT 405 Query 39215 CTCG-TGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC-CGA-CACGTCGGGCGGCAG 39271 ||| ||| | | | ||||||| | | | ||| ||| || |||||| |||||||| Sbjct 404 GTCGGTGCCCACAG----GGGTGAA-GTTCAGCTCG-GACTCGTTCACGTCCGGCGGCAG 351 Query 39272 GACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTC 39331 ||| | ||||||| | || ||||| ||||||| |||||| ||||| ||||||||| Sbjct 350 CACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGTC 291 Query 39332 GCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGC 39391 |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| Sbjct 290 GCCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGC 231 Query 39392 CGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGC 39451 || | ||||| || || ||||| ||||| ||||||||||||||||| |||||| | | Sbjct 230 GGTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCGA 171 Query 39452 GAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCG 39511 |||||| | ||| | |||||||| |||| ||| || | || |||||||| || || Sbjct 170 GAACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCAC 111 Query 39512 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39571 | |||| || || | | ||| |||| |||| || | ||||||||||||||| Sbjct 110 CATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCAT 51 Query 39572 CGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGC 39613 || ||||| || | ||| ||||| ||||| | ||| || || Sbjct 50 GGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163874333702104