Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq4991 760 0.0 >seq4991 Length=1104 Score = 760 bits (842), Expect = 0.0 Identities = 733/939 (78%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||| Sbjct 128 GCCATCAACTGGAACCGCGTCCAGGACGAGAAGGACACCGAGGTCTGGGACCGTCTGACC 187 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||||||||||||||| |||||| | || | ||||||||| | | | ||||| || Sbjct 188 TCCAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACGTGCAGTCCTGGAAGACC 247 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 || || | || ||||| | |||||| ||| ||||||||| |||||||| |||| ||| Sbjct 248 CTCACCGCCGAGGAGCAGGACCTCACCATGAAGGTCTTCACGGGCCTGACCCTGCTGGAC 307 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 || ||||||||||| ||||| || || || ||||| ||||| | || | ||||||| Sbjct 308 ACCATCCAGGGCACGGTGGGCGCGGTCTCGCTCATCCCGGACGCCAAGACCCTGCACGAG 367 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 |||||||||||||| |||||||| ||||||||||| |||||||| ||| |||| | Sbjct 368 GAGGCGGTGTACACCAACATCGCCTTCATGGAGTCCGTGCACGCCAAGTCCTACTCCTCG 427 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 |||||||| ||||||| ||| ||| ||||||||| ||||||||||||||| ||||| Sbjct 428 ATCTTCTCCACGCTGTCCTCCATGAAGCAGATCGACGAGGCGTTCCGCTGGTCCAAGGAG 487 Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685 || | ||||||| |||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 488 AACGAGCACCTGCAGCGCAAGGCGGACATCGTCCTGCGCTACTACAAGGGTGACGACCCG 547 Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745 |||||| |||||||||||| ||| |||||||| ||||||||||||||||| |||||| Sbjct 548 CTGAAGAAGAAGGTGGCCTCCACGCTGCTGGAGTCCTTCCTGTTCTACTCGGGGTTCTAC 607 Query 59746 CTGCCGATGTACTGGTCTAGTCG--GGGGAAGCTGACGAACACGGCCGACATGATCCGGC 59803 ||||| ||||||| ||| ||| | |||||||| ||||| || ||| ||||||||| Sbjct 608 CTGCCCATGTACT--TCTCCTCGCACGCCAAGCTGACCAACACCGCGGACCTGATCCGGC 665 Query 59804 TCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCC 59863 | ||||| || |||||||| |||||||||||||||||||| ||||||| |||| || | Sbjct 666 TGATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTACCAGAAGGGTC 725 Query 59864 TGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTAC 59923 || | ||| | | |||| ||||||||||||||||||| |||| ||||| Sbjct 726 TGCTGCAGGAGACCCCCGAGCGCCAGCAGGAGCTGAAGGACTACACCTACGACCTGCTGG 785 Query 59924 TCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGA 59983 |||| | |||||||||||| | | ||| | ||| || |||||| |||||| || Sbjct 786 ACGAGCTCTACGACAACGAGGTGGCCTACGCCGAGGCCCTCTACGACTCCGTGGGCTGGA 845 Query 59984 CTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCT 60043 | ||||| ||||||| ||| |||| ||||||||| |||||||| |||| || || |||| Sbjct 846 CCGAGGACGTCAAGAAGTTTCTGCACTACAACGCGAACAAGGCCCTGAACAACCTGGGCT 905 Query 60044 ACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGT 60103 |||||||||||||||||||||| || || || |||||||| | | | |||| Sbjct 906 ACGAGGCGCTGTTCCCGCGCGAGATGACGGACGTCTCCCCGGCGATCCTCTCCTCGCTGT 965 Query 60104 CCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTG 60163 |||| || |||||||||||||||||||||||| ||||| ||| | | || ||||| | Sbjct 966 CCCCGAACGCGGACGAGAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCTACGTGATCG 1025 Query 60164 GCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 ||||||| | | ||||| |||||||| |||||||||| Sbjct 1026 GCAAGGCCGTGAACACGGAGGACGAGGACTGGGACTTCT 1064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258914228516328