Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq2959 688 0.0 seq5028 315 2e-81 >seq2959 Length=2134 Score = 688 bits (762), Expect = 0.0 Identities = 1395/2040 (68%), Gaps = 72/2040 (4%) Strand=Plus/Plus Query 39923 CACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTC 39982 ||| ||||||||||| | ||| || | |||| | | ||||||||||| || | ||| Sbjct 19 CACCTGCTCCTGGTACACGATCAGGCCGTAGGTGGTGCCCAGGATCTCCTCGAGCGGCTC 78 Query 39983 GGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTT 40042 || | |||||||||||| || |||||| ||||| |||||||| || || |||||||| Sbjct 79 CGCGAGCTCGGGGTGGATGGGGGTGATCTCCTGCGCGCCGTTCTTGCGCAGCGCGTAGTT 138 Query 40043 CGTGTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATGTC 40102 ||||| || | ||||||| ||||| || ||||| || |||| | || |||||||| Sbjct 139 GGTGTGGGAGTTCGCGCCCATGGGACCCGGCCGGTAGAGGGCGATGGTCGCGGAGATGTC 198 Query 40103 CTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTG 40162 ||||||||||||||| || || |||||| |||||| | |||||||| ||||| Sbjct 199 CTCGAAGTTGTCCGGGCGCATGAGCTTGAGCAGCTGGCGCATGGGCCCGCCGTCCAGCTG 258 Query 40163 GAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGG 40222 ||| || || ||||| || | ||||||||||||||| | |||||||||| | ||| Sbjct 259 GAACACGCCCAGGGTGTCCCCGCGGGCCAGCAGCTCGTAGGAGCCGGGGTCGTCGATGGG 318 Query 40223 GATGTTCTCCAGGTCGA---CGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTC 40279 | || ||||||||| | || | | ||||| || ||||||||| | |||||| Sbjct 319 CAGGTGCTCCAGGTCCAGCACGAAGCCGTCCCGGTTCAGCGTGATGTTCTCCAGCGCGTC 378 Query 40280 GCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTC 40339 | |||||||||||||| || ||||| |||||||||||||| | ||| ||||| |||| Sbjct 379 GGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGCCCCAGGCCCTC 438 Query 40340 GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGG 40399 ||| | |||||||||||||| |||||| | ||||||||| || | | ||| Sbjct 439 GCACGTGGGGTAGTCGAACTGGGTGATCACCTGACCGTCCTGCTCGCGGCGCATGAGCGG 498 Query 40400 GATGTGGTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTG 40459 |||| ||||| |||||| || |||||||||||| || || |||||||||||| ||| Sbjct 499 GATGATGTCGATCAGCGGGTCCGAGGACATGATCACGCCCGCGGCGTGCACACCCCACTG 558 Query 40460 CCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGA 40519 || ||| || || || || | || || |||| ||||| | ||| || |||||| Sbjct 559 GCGCTTGAGCCCCTCCAGGCCCTGGGCTGTCTCGAAGACCTTCATGGACTCGGGGTCGTC 618 Query 40520 GCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGA---GGGTGCTCGGCGTTGAA 40576 || | | || | ||| ||||||| ||||| || | || || | ||| || Sbjct 619 CTCGAGCACCTCGCGCAGCTCACCGGCCTCGTCGTAGCGCTTGGCGTCCTTGTCGTAGAC 678 Query 40577 GATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTT 40636 | ||| | |||| || |||||||| ||||| | ||| |||||||| ||| Sbjct 679 G-TCCTGC--AGGGAGATGCCCTTGCCCATGACGTCCGGCGGCATGGCCTTGGTGAGCCG 735 Query 40637 CTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGC 40696 ||| || | ||| || | | | |||||||| | | |||||| | ||| | || Sbjct 736 CTCCCCCATGGAGAACGGGTAGCCGAGCACGCGTGAGGAGTCCTTGAGCGCCTGCTTGGC 795 Query 40697 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGAC 40756 |||||| |||||||| ||||| || || ||| | ||||||||| ||||| Sbjct 796 CTTGATGGTGCCGTACGTGACGATCATGGCCACGCGCTCGTCGCCGTACTTCTCCGTGAC 855 Query 40757 GTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGA 40816 ||| |||||||||||| || || ||||| |||||||| | ||||| ||||||||||| Sbjct 856 GTAGTGGATCACCTCGGAGCGGCGGCGGTCGTCGAAGTCCACGTCGAAGTCGGGCATGGA 915 Query 40817 CACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTC 40876 |||||| || ||||| ||||| ||||||||||| ||||||||| | ||||||| || || Sbjct 916 CACGCGGTCCGGGTTGAGGAAGCGCTCGAAGATCAGCCCGTGCGCGAGCGGGTTCAGCTC 975 Query 40877 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40936 |||||| | | | |||| || |||| |||||||| | || || || || || || || Sbjct 976 GGTGATGCGCATGGCGTACGCCACCATGGAACCGGCACCGGAACCACGGCCGGGACCCAC 1035 Query 40937 CCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40996 | || |||||| ||||| | |||| ||||||||||||||| || |||||||| || Sbjct 1036 GCGGATGCCGTTGTCCTTGGACCAGTTGATGAAGTCCGCGACCACCAGGAAGTAGCCGGG 1095 Query 40997 GAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTC 41056 |||||||||||||||||| || | ||||||||| | ||||| | | ||| ||| Sbjct 1096 GAAGCCCATCTGGATGATGATCTTCTTCTCGTACTCGGCCTGCT---CACGGACGTCGTC 1152 Query 41057 CG---TGCCGTTCGGGTACCGACGACGC-GCGCCTCGGGCGACCTCGTCCTCGAACCAGG 41112 || | ||| |||| | || || || ||| ||||||| | |||||| | Sbjct 1153 CGGGATCCCGCCCGGGAAGCGGTAGTGCAGCCCCT-TCTCGACCTCCTTGATGAACCACG 1211 Query 41113 TGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTC----GTGCTCG 41168 | |||| | |||||||||| ||||| |||||| ||| | ||| ||| Sbjct 1212 AGGTCTCGTCCTCCCCCTCGGGCGTGGGGAAGCGCGGCATGTAGTTGGCGGAGGTG-TCG 1270 Query 41169 AACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCATCCCCC---- 41223 ||| | | | | || ||||||||| ||||| ||| | |||| || | Sbjct 1271 AAC-TCCACCTCGCAGCG-----CTCGGCGATCTCCAGGGTGTTGTCGCACGCCTCGGGG 1324 Query 41224 -ACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGTAC 41282 | |||| || | || ||| || ||||| ||| ||||| |||||| || Sbjct 1325 AAGTCCC----GGAACAG--CTCG-----CG-CATCTGCTCGGGGGACTTGAGGTAGAAC 1372 Query 41283 CCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCAC 41342 || | ||||| |||||| | |||| | ||||||| ||||| ||| |||||| Sbjct 1373 TCGTCCGCGTCGAACTTGAAGCGCTTGGGGTCCTGCAGCGTGGAGCCGGACTGCACGCAC 1432 Query 41343 AGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACC 41402 ||||| || |||| | | ||||||||| | |||||| ||||| ||| || Sbjct 1433 AGCAGCGCCGCGTGGGACTTGGCGTCCTCGGCGTGGGTGTAGTGCAGGTCGTTGGTGGCC 1492 Query 41403 ACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCG 41462 || | | || |||| ||| | || || ||| |||| | || || |||| Sbjct 1493 ACGAGCGGCAGGCTCAGGTCCTTGGCCAGGCGCAGCAGGTCCTGGGTCACACGCTTCTCG 1552 Query 41463 ATCTCGATGCCGTGGTCCATCAGCTC-CAG--GAAGTACCGGTCACGCCCGAAGACCTCC 41519 || | | |||||||||||||| || ||| ||||| | || |||||||| ||| Sbjct 1553 ATGCCCAGCCCGTGGTCCATCAGTTCGCAGTAGAAGTTC---TCCGCCCCGAAGATGTCC 1609 Query 41520 AGGTACCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGGGTCATG 41579 || || |||| |||| || |||||||||||||| || || |||||||||| Sbjct 1610 CGGAACTCCGCGGCGGCCTTGACCGCCTCGTCGTACTGGCCCAGCCGCAGCCGGGTCTGC 1669 Query 41580 ATCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGG 41639 | | | ||| || || || || ||| ||| || |||| | || || | | ||| Sbjct 1670 ACCTCGCCGGACGGGCAGCCCGTGGTGGCGATGAGCCCCTTGCCGTACTGGTTCAGCAGC 1729 Query 41640 TCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGAC-CGCGAGCTGAG 41698 || ||||||||| || ||| ||| |||||||| || ||| | | | | | Sbjct 1730 TCCCGGTCCATGCGGGG---CTTGTACAGCTGGCCCTCCAGGGACGCCTTGGTGGACGCG 1786 Query 41699 CTTCATGAGGTTGTGCAGGCCGGTCTTGTTCG--TG-GAGAGGATCGTGAGGTGCGTGTA 41755 | | ||||| |||| ||| || | | | || | || | || | ||||||||| Sbjct 1787 C-GGAACAGGTTCTGCATGCC---CTCGCTGGACTGCGCCAGCAGGGTCATGTGCGTGTA 1842 Query 41756 CGCACCCCGACCGCTCACGTCGTACCGCTTCTGGTCTTCCGTG--CCCCAC-TGGACTCG 41812 || || |||| ||||||| ||| | | | |||| | | ||| || || Sbjct 1843 GGCGCCGGCACCGGATACGTCGT--CGCGGC-CGCCGTCCGCGAACTTCACGCGGGTGCG 1899 Query 41813 CTCCTGGTCGAAGCGGGAGTCCGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGAC 41872 |||||| || | || | |||| | | ||| ||||| | ||||||||||||||||| Sbjct 1900 GTCCTGG-CG--GGCGGTGCCCGGCGTGAGGTAGGCCTCCACGCCGATGATCGGCTTGAT 1956 Query 41873 CCCAGCGGCCTGCGCCGAGGTGAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGTCCGT 41932 || || || ||||| | | |||||||| |||| ||| | | ||||||||||| Sbjct 1957 GCCGGCCGCGCGCGCCTTGTTCCAGAAGTCGAACGCCCCGAACACGAACCCGTGGTCCGT 2016 >seq5028 Length=1094 Score = 315 bits (348), Expect = 2e-81 Identities = 424/582 (73%), Gaps = 15/582 (3%) Strand=Plus/Minus Query 39326 GTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCTCGCTTGCT---CACGGTCGCCTG 39382 |||||||||||||||||||| || ||||||||||| |||||| | ||| |||| | Sbjct 581 GTCGAACGCACCGGCCTTGACCATGGACTCGATGGTCCGCTTGTTGCACACCACCGCCGG 522 Query 39383 AGTCGCTGCCTTCAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGGAGTTC 39442 | | ||| |||||||| | ||| |||||||||||| | | ||| || Sbjct 521 AACCTTGGCC---AGGAAGTCGTTGAAGGACGTGAACTTCCCCTGCTCGTTGCGGGCGTC 465 Query 39443 GGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGAT 39502 | || || ||||| | |||||||||| ||| ||| || ||||||||||| Sbjct 464 CACCATGGCCTGGACCACGTTGGCGCCCACGTTGCGCACCGCGCCCATGCCGAAGCGGAT 405 Query 39503 CTCG-TGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC-CGA-CACGTCGGGCGGCAG 39559 ||| ||| | | | ||||||| | | | ||| ||| || |||||| |||||||| Sbjct 404 GTCGGTGCCCACAG----GGGTGAA-GTTCAGCTCG-GACTCGTTCACGTCCGGCGGCAG 351 Query 39560 GACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTC 39619 ||| | ||||||| | || ||||| ||||||| |||||| ||||| ||||||||| Sbjct 350 CACCGTGATGCCCATGTGACGGCACTCGGTGAGGTACATGGCCAGCTTGTCCTTGTCGTC 291 Query 39620 GCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGC 39679 |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| Sbjct 290 GCCCACCGAGGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGC 231 Query 39680 CGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGC 39739 || | ||||| || || ||||| ||||| ||||||||||||||||| |||||| | | Sbjct 230 GGTCCAGTACGAGACCAGCCCGTAGGCCGCGGAGTGCGCCTTGTTGAACGCGTAGTCCGA 171 Query 39740 GAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCG 39799 |||||| | ||| | |||||||| |||| ||| || | || |||||||| || || Sbjct 170 GAACGGCAGCAGGATGTCCCACAGCGCCTTGATCGCGGCCTCGGAGTAGCCGCGGTCCAC 111 Query 39800 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39859 | |||| || || | | ||| |||| |||| || | ||||||||||||||| Sbjct 110 CATGCCCTGGTGAAATCCCTGGTACTGCTTGTCCAGCTCCGCCTTCTTCTTCTTGCCCAT 51 Query 39860 CGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGC 39901 || ||||| || | ||| ||||| ||||| | ||| || || Sbjct 50 GGCACGGCGGAGGATGTCCGCCTGGCCGAGCGAGTAGCCCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164834272392904